EY701055 | Citrus Genome Database

Overview


Name	EY701055
Unique Name	EY701055
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	957

Libraries


Library Name	Type
Sweet orange fruit, development stadium (1 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.151e-32
Identity = 47/87 (54.02%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  154 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            +N+VVIGHVD+GKST  GH++Y LG ++KR + ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPG
Sbjct:  256 LNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVVTLMDAPG 342

HSP 2 Score: 53.5286 bits (127), Expect = 1.151e-32
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAG 526
            GH+DFI NMITG +QAD AVL++D++ G FEAG    G
Sbjct:  342 GHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGG 379

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.158e-32
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            M  +  H+N++ IGHVD GKST  G L+Y+ G I   +IE + KEA +  K +F++AWV+D+ K ERERG+TID+A  KFET +YY T+IDAPG
Sbjct:    1 MASQKPHLNLITIGHVDHGKSTLVGRLLYEHGEIPAHIIEEYRKEAEQKGKATFEFAWVMDRFKEERERGVTIDLAHRKFETDKYYFTLIDAPG 94

HSP 2 Score: 48.1358 bits (113), Expect = 1.158e-32
Identity = 40/136 (29.41%), Postives = 60/136 (44.12%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAGSDSWTMLVAWLPPLGVEARLRWAGGYGRMDCRATPQGTPQ-------AVRVRRKIS*KGASSFPCP-*RNRRWSAPPPQHISPLPWPPPPAVCRALPA 796
            GHRDF+KNMITGTSQAD A+L+I +  G  E  + +    ++      +P + V           +MD  + P    +       A ++ R I  K  S  P    +    + P P     +PW   P + +AL A
Sbjct:   94 GHRDFVKNMITGTSQADAAILVISAREG--EGVMEQTREHAFLARTLGVPQMVV--------AINKMDATSPPYSEKRYNEVKADAEKLLRSIGFKDISFVPISGYKGDNVTKPSPN----MPWYKGPTLLQALDA 215

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.964e-32
Identity = 58/94 (61.70%), Postives = 69/94 (73.40%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            M KE  H+NIV IGHVD GKSTT G L+Y  G I + +I++FE E  E  K SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPG
Sbjct:    1 MPKEKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPG 92

HSP 2 Score: 47.3654 bits (111), Expect = 1.964e-32
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GHRDF+KNMITG SQAD AVL++ +T G
Sbjct:   92 GHRDFVKNMITGASQADAAVLVVAATDG 119

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.964e-32
Identity = 58/94 (61.70%), Postives = 69/94 (73.40%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            M KE  H+NIV IGHVD GKSTT G L+Y  G I + +I++FE E  E  K SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPG
Sbjct:    1 MPKEKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPG 92

HSP 2 Score: 47.3654 bits (111), Expect = 1.964e-32
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GHRDF+KNMITG SQAD AVL++ +T G
Sbjct:   92 GHRDFVKNMITGASQADAAVLVVAATDG 119

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.558e-32
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            M K+  H+NIV IGHVD GKSTT G L+Y  G I +++I++FE E  E  K SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPG
Sbjct:    1 MPKDKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPEQIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPG 92

HSP 2 Score: 47.3654 bits (111), Expect = 2.558e-32
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GHRDF+KNMITG SQAD AVL++ +T G
Sbjct:   92 GHRDFVKNMITGASQADAAVLVVAATDG 119

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.558e-32
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            M     H+N+  IGHVD GKST  G ++Y++G ID+ +IE++ KEAA   K +F++AWV+D LK ERERG+TIDIA  +F+T +YY TV+D PG
Sbjct:    1 MADTKPHLNLAFIGHVDHGKSTLVGRMMYEMGAIDEHIIEQYRKEAAAKGKATFEFAWVMDSLKEERERGVTIDIAHQRFDTDKYYFTVVDCPG 94

HSP 2 Score: 45.0542 bits (105), Expect = 2.558e-32
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GHRDF+KNMITG SQAD AVL++ +  G
Sbjct:   94 GHRDFVKNMITGASQADAAVLVVAAPDG 121

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.310e-32
Identity = 47/87 (54.02%), Postives = 66/87 (75.86%), Query Frame = 1

Query:  154 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            +N+VVIGHVD+GKST  GHL+Y LG ++KR + ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFET     T++DAPG
Sbjct:  263 LNLVVIGHVDAGKSTLMGHLLYLLGDVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKVITLMDAPG 349

HSP 2 Score: 53.5286 bits (127), Expect = 4.310e-32
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAG 526
            GH+DFI NMITG +QAD AVL++D++ G FEAG    G
Sbjct:  349 GHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGG 386

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 4.339e-32
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            M  +  H+N++ IGHVD GKST  G L+++ G I   +IE + KEA +  K +F++AWV+D+ K ERERG+TID+A  KFET +YY T+IDAPG
Sbjct:    1 MASQKPHLNLITIGHVDHGKSTLVGRLLFEHGEIPAHIIEEYRKEAEQKGKATFEFAWVMDRFKEERERGVTIDLAHRKFETDKYYFTLIDAPG 94

HSP 2 Score: 47.7506 bits (112), Expect = 4.339e-32
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GHRDF+KNMITGTSQAD A+L+I +  G
Sbjct:   94 GHRDFVKNMITGTSQADAAILVISAREG 121

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.649e-32
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            M K+  H+NIV IGHVD GKSTT G L+Y  G I +++I++FE E  E  K SFK+AWV+D+L+ ERERGITID+A  KFET   Y T+IDAPG
Sbjct:    3 MPKDKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPEQIIKKFE-EMGEKGK-SFKFAWVMDRLREERERGITIDVAHTKFETPHRYITIIDAPG 94

HSP 2 Score: 47.3654 bits (111), Expect = 5.649e-32
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GHRDF+KNMITG SQAD AVL++ +T G
Sbjct:   94 GHRDFVKNMITGASQADAAVLVVAATDG 121

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.651e-32
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            M  E  H+N+ VIGH+D GKSTT G L+++ G +   +IE F KEA    K SF++AWV+D LK ERERGITIDIA  +F+T +YY TV+D PG
Sbjct:    1 MAAEKPHMNLAVIGHIDHGKSTTVGRLLFETGTVPPHIIESFRKEAESKGKGSFEFAWVMDSLKEERERGITIDIAHKRFDTDKYYFTVVDCPG 94

HSP 2 Score: 44.669 bits (104), Expect = 5.651e-32
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFE 505
            GHRDF+KNMITG SQAD A+L++ +  G  E
Sbjct:   94 GHRDFVKNMITGASQADAALLVVAAPDGVME 124

The following BLAST results are available for this feature:

BLAST of EY701055 vs. ExPASy Swiss-Prot

BLAST of EY701055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279


Match Name	E-value	Identity	Description
HBS1L_RAT	1.151e-32	54.02	HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE...	[more]
EF1A_THEAC	1.158e-32	53.19	Elongation factor 1-alpha OS=Thermoplasma acidophi...	[more]
EF1A_PYRHO	1.964e-32	61.70	Elongation factor 1-alpha OS=Pyrococcus horikoshii...	[more]
EF1A_PYRAB	1.964e-32	61.70	Elongation factor 1-alpha OS=Pyrococcus abyssi GN=...	[more]
EF1A_PYRFU	2.558e-32	60.64	Elongation factor 1-alpha OS=Pyrococcus furiosus G...	[more]
EF1A_METTP	2.558e-32	53.19	Elongation factor 1-alpha OS=Methanosaeta thermoph...	[more]
HBS1L_BOVIN	4.310e-32	54.02	HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1	[more]
EF1A_THEVO	4.339e-32	52.13	Elongation factor 1-alpha OS=Thermoplasma volcaniu...	[more]
EF1A_PYRWO	5.649e-32	59.57	Elongation factor 1-alpha OS=Pyrococcus woesei GN=...	[more]
EF1A_METMJ	5.651e-32	55.32	Elongation factor 1-alpha OS=Methanoculleus marisn...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-700-102-E02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY701055 ID=EY701055; Name=EY701055; organism=Citrus sinensis; type=EST; length=957bp
TTGCGGCCGCGCCGGCCCCCCAACNTGTGTTCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTACATTTGCATAATGGGTAAGGAGAACACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAGGTACTACTGCACCGTCA
TTGATGCTCCTGGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCTACCACCGGTGGTT
TTGAAGCTGGTATCTCCCGGGCAGGGTCAGACTCCTGGACCATGCTCGTT
GCTTGGCTTCCACCCTTGGGTGTGGAAGCCAGACTGAGGTGGGCTGGCGG
GTACGGACGGATGGATTGCCGGGCGACCCCCCAAGGTACGCCACAGGCGG
TACGCGTCCGACGCAAAATTTCGTGAAAGGGAGCGTCCTCCTTTCCGTGC
CCTTGAAGGAACCGGCGTTGGAGTGCCCCCCCCCCGCAGCACATTTCTCC
CCTTCCGTGGCCCCCACCTCCCGCGGTTTGCAGGGCGTTACCAGCCTGCA
GTCGCTTAAGTGGCCCACCCGGCGTTCGGCCGGGGGTTAGGGGGGGGGCG
TGGGGGGGGGGGGGGGGGCCGCGCACGCCGCGCCGCCCCGCCCCGGAGGG
GGCGGGCCCGCCCGGCCCGCCGCGCGGGCTGGCCGGCCCCCCCCCCCAGC
GCCGGCC