EY701055 | Citrus Genome Database

Overview


Name	EY701055
Unique Name	EY701055
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	957

Libraries


Library Name	Type
Sweet orange fruit, development stadium (1 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EFTU_MYCSS (Elongation factor Tu OS=Mycobacterium sp. (strain MCS) GN=tuf PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 9.660e-11
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 1

Query:  151 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T + +   +DAPG
Sbjct:   12 HVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPG 86

HSP 2 Score: 39.6614 bits (91), Expect = 9.660e-11
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GH D+IKNMITG +Q D A+L++ +T G
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDG 113

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EFTU_MYCSK (Elongation factor Tu OS=Mycobacterium sp. (strain KMS) GN=tuf PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 9.660e-11
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 1

Query:  151 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T + +   +DAPG
Sbjct:   12 HVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPG 86

HSP 2 Score: 39.6614 bits (91), Expect = 9.660e-11
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GH D+IKNMITG +Q D A+L++ +T G
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDG 113

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EFTU_MYCSJ (Elongation factor Tu OS=Mycobacterium sp. (strain JLS) GN=tuf PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 9.660e-11
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 1

Query:  151 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T + +   +DAPG
Sbjct:   12 HVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPG 86

HSP 2 Score: 39.6614 bits (91), Expect = 9.660e-11
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GH D+IKNMITG +Q D A+L++ +T G
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDG 113

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EFTU_MYCS2 (Elongation factor Tu OS=Mycobacterium smegmatis GN=tuf PE=1 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 9.660e-11
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 1

Query:  151 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            H+NI  IGHVD GK+T T         I K + ++F     ++N+ R+F     +D    ER+RGITI+I+  +++T + +   +DAPG
Sbjct:   12 HVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNESRAFDQ---IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPG 86

HSP 2 Score: 39.6614 bits (91), Expect = 9.660e-11
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GH D+IKNMITG +Q D A+L++ +T G
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDG 113

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EFTU_MYCMM (Elongation factor Tu OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tuf PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 9.660e-11
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 1

Query:  151 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T + +   +DAPG
Sbjct:   12 HVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPG 86

HSP 2 Score: 39.6614 bits (91), Expect = 9.660e-11
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GH D+IKNMITG +Q D A+L++ +T G
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDG 113

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBT (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=tuf PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 9.660e-11
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 1

Query:  151 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T + +   +DAPG
Sbjct:   12 HVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPG 86

HSP 2 Score: 39.6614 bits (91), Expect = 9.660e-11
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GH D+IKNMITG +Q D A+L++ +T G
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDG 113

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBP (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tuf PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 9.660e-11
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 1

Query:  151 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T + +   +DAPG
Sbjct:   12 HVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPG 86

HSP 2 Score: 39.6614 bits (91), Expect = 9.660e-11
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GH D+IKNMITG +Q D A+L++ +T G
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDG 113

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBO (Elongation factor Tu OS=Mycobacterium bovis GN=tuf PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 9.660e-11
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 1

Query:  151 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T + +   +DAPG
Sbjct:   12 HVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPG 86

HSP 2 Score: 39.6614 bits (91), Expect = 9.660e-11
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GH D+IKNMITG +Q D A+L++ +T G
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDG 113

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EFTU_MICLC (Elongation factor Tu OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=tuf PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 9.660e-11
Identity = 31/89 (34.83%), Postives = 50/89 (56.18%), Query Frame = 1

Query:  151 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            H+NI  IGHVD GK+T T         I K + +++     ++N+ R F     +D    ER+RGITI+I+  +++T + +   +DAPG
Sbjct:   12 HVNIGTIGHVDHGKTTLTA-------AISKVLYDKYP----DLNEARDFA---TIDSAPEERQRGITINISHVEYQTEKRHYAHVDAPG 86

HSP 2 Score: 39.6614 bits (91), Expect = 9.660e-11
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GH D+IKNMITG +Q D A+L++ +T G
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDG 113

The following BLAST results are available for this feature:

BLAST of EY701055 vs. ExPASy Swiss-Prot

BLAST of EY701055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279


Match Name	E-value	Identity	Description
EFTU_MYCSS	9.660e-11	35.96	Elongation factor Tu OS=Mycobacterium sp. (strain ...	[more]
EFTU_MYCSK	9.660e-11	35.96	Elongation factor Tu OS=Mycobacterium sp. (strain ...	[more]
EFTU_MYCSJ	9.660e-11	35.96	Elongation factor Tu OS=Mycobacterium sp. (strain ...	[more]
EFTU_MYCS2	9.660e-11	35.96	Elongation factor Tu OS=Mycobacterium smegmatis GN...	[more]
EFTU_MYCMM	9.660e-11	35.96	Elongation factor Tu OS=Mycobacterium marinum (str...	[more]
EFTU_MYCBT	9.660e-11	36.36	Elongation factor Tu OS=Mycobacterium bovis (strai...	[more]
EFTU_MYCBP	9.660e-11	36.36	Elongation factor Tu OS=Mycobacterium bovis (strai...	[more]
EFTU_MYCBO	9.660e-11	36.36	Elongation factor Tu OS=Mycobacterium bovis GN=tuf...	[more]
EFTU_MICLC	9.660e-11	34.83	Elongation factor Tu OS=Micrococcus luteus (strain...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-700-102-E02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY701055 ID=EY701055; Name=EY701055; organism=Citrus sinensis; type=EST; length=957bp
TTGCGGCCGCGCCGGCCCCCCAACNTGTGTTCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTACATTTGCATAATGGGTAAGGAGAACACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAGGTACTACTGCACCGTCA
TTGATGCTCCTGGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCTACCACCGGTGGTT
TTGAAGCTGGTATCTCCCGGGCAGGGTCAGACTCCTGGACCATGCTCGTT
GCTTGGCTTCCACCCTTGGGTGTGGAAGCCAGACTGAGGTGGGCTGGCGG
GTACGGACGGATGGATTGCCGGGCGACCCCCCAAGGTACGCCACAGGCGG
TACGCGTCCGACGCAAAATTTCGTGAAAGGGAGCGTCCTCCTTTCCGTGC
CCTTGAAGGAACCGGCGTTGGAGTGCCCCCCCCCCGCAGCACATTTCTCC
CCTTCCGTGGCCCCCACCTCCCGCGGTTTGCAGGGCGTTACCAGCCTGCA
GTCGCTTAAGTGGCCCACCCGGCGTTCGGCCGGGGGTTAGGGGGGGGGCG
TGGGGGGGGGGGGGGGGGCCGCGCACGCCGCGCCGCCCCGCCCCGGAGGG
GGCGGGCCCGCCCGGCCCGCCGCGCGGGCTGGCCGGCCCCCCCCCCCAGC
GCCGGCC