EY701055 | Citrus Genome Database

Overview


Name	EY701055
Unique Name	EY701055
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	957

Libraries


Library Name	Type
Sweet orange fruit, development stadium (1 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 8.245e-57
Identity = 83/94 (88.30%), Postives = 88/94 (93.62%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            MGKE THINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFET++YY T+IDAPG
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPG 94

HSP 2 Score: 68.1662 bits (165), Expect = 8.245e-57
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAGSDSWTMLVAWLPPLGVEARLRWAGGYGRMDCRATPQGTPQAVRVRRKIS 673
            GHRDFIKNMITGTSQADCAVLI+ +  G FEAGIS+ G      L+A+   LGV+  +    G  +MD    P    +   + +++S
Sbjct:   94 GHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAY--TLGVKQLI---VGINKMDSTEPPYSQKRYEEIVKEVS 175

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.827e-56
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            MGKE THINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFETT+YY T+IDAPG
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPG 94

HSP 2 Score: 65.4698 bits (158), Expect = 1.827e-56
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAGSDSWTMLVAWLPPLGVE 577
            GHRDFIKNMITGTSQADCAVLI+ +  G FEAGIS+ G      L+A+   LGV+
Sbjct:   94 GHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAY--TLGVK 146

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.827e-56
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            MGKE THINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFETT+YY T+IDAPG
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPG 94

HSP 2 Score: 65.4698 bits (158), Expect = 1.827e-56
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAGSDSWTMLVAWLPPLGVE 577
            GHRDFIKNMITGTSQADCAVLI+ +  G FEAGIS+ G      L+A+   LGV+
Sbjct:   94 GHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAY--TLGVK 146

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.827e-56
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            MGKE THINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFETT+YY T+IDAPG
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPG 94

HSP 2 Score: 65.4698 bits (158), Expect = 1.827e-56
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAGSDSWTMLVAWLPPLGVE 577
            GHRDFIKNMITGTSQADCAVLI+ +  G FEAGIS+ G      L+A+   LGV+
Sbjct:   94 GHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAY--TLGVK 146

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.827e-56
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            MGKE THINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFETT+YY T+IDAPG
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPG 94

HSP 2 Score: 65.4698 bits (158), Expect = 1.827e-56
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAGSDSWTMLVAWLPPLGVE 577
            GHRDFIKNMITGTSQADCAVLI+ +  G FEAGIS+ G      L+A+   LGV+
Sbjct:   94 GHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAY--TLGVK 146

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.827e-56
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            MGKE THINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFETT+YY T+IDAPG
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPG 94

HSP 2 Score: 65.4698 bits (158), Expect = 1.827e-56
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAGSDSWTMLVAWLPPLGVE 577
            GHRDFIKNMITGTSQADCAVLI+ +  G FEAGIS+ G      L+A+   LGV+
Sbjct:   94 GHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAY--TLGVK 146

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 1.827e-56
Identity = 81/94 (86.17%), Postives = 90/94 (95.74%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            MGKE THINIVVIGHVD+GKSTTTGHLIYK GGIDKRVIE++EKEA+EM K+SFKYAWV+DKLKAERERGITIDIALWKFET++YY T+IDAPG
Sbjct:    1 MGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEASEMGKQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPG 94

HSP 2 Score: 67.781 bits (164), Expect = 1.827e-56
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAGSDSWTMLVAWLPPLGVE 577
            GHRDFIKNMITGTSQADCAVL+I S TG FEAGI++ G      L+A+   LGV+
Sbjct:   94 GHRDFIKNMITGTSQADCAVLVIASPTGEFEAGIAKNGQTREHALLAY--TLGVK 146

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.382e-56
Identity = 82/94 (87.23%), Postives = 87/94 (92.55%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            MGKE  HINIVVIGHVDSGKST+TGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDIALWKFET++YY T+IDAPG
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPG 94

HSP 2 Score: 69.3218 bits (168), Expect = 2.382e-56
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAGSDSWTMLVAWLPPLGVEARLRWAGGYGRMDCRATPQGTPQAVRVRRKIS 673
            GHRDFIKNMITGTSQADCAVLI+ +  G FEAGIS+ G      L+A+   LGV+  +    G  +MD    P    +   +++++S
Sbjct:   94 GHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAF--TLGVKQLI---VGVNKMDSTEPPYSQARFEEIQKEVS 175

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.048e-56
Identity = 82/94 (87.23%), Postives = 85/94 (90.43%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            MGKE  HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITIDIALWKFET +YY T+IDAPG
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPG 94

HSP 2 Score: 69.3218 bits (168), Expect = 4.048e-56
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAGSDSWTMLVAWLPPLGVEARLRWAGGYGRMDCRATPQGTPQAVRVRRKIS 673
            GHRDFIKNMITGTSQADCAVLI+ +  G FEAGIS+ G      L+A+   LGV+  +    G  +MD    P    +   +++++S
Sbjct:   94 GHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAY--TLGVKQLI---VGVNKMDSTEPPFSEARFEEIKKEVS 175

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.277e-56
Identity = 82/94 (87.23%), Postives = 85/94 (90.43%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            MGKE  HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITIDIALWKFET +YY T+IDAPG
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPG 94

HSP 2 Score: 68.9366 bits (167), Expect = 5.277e-56
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAGSDSWTMLVAWLPPLGVEARLRWAGGYGRMDCRATPQGTPQAVRVRRKIS 673
            GHRDFIKNMITGTSQADCAVLI+ +  G FEAGIS+ G      L+A+   LGV+  +    G  +MD    P    +   +++++S
Sbjct:   94 GHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAF--TLGVKQLI---VGVNKMDMTDPPYSEARFEEIKKEVS 175

The following BLAST results are available for this feature:

BLAST of EY701055 vs. ExPASy Swiss-Prot

BLAST of EY701055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279


Match Name	E-value	Identity	Description
EF1A0_XENLA	8.245e-57	88.30	Elongation factor 1-alpha, somatic form OS=Xenopus...	[more]
EF1A2_RAT	1.827e-56	89.36	Elongation factor 1-alpha 2 OS=Rattus norvegicus G...	[more]
EF1A2_RABIT	1.827e-56	89.36	Elongation factor 1-alpha 2 OS=Oryctolagus cunicul...	[more]
EF1A2_MOUSE	1.827e-56	89.36	Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef...	[more]
EF1A2_HUMAN	1.827e-56	89.36	Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF...	[more]
EF1A2_BOVIN	1.827e-56	89.36	Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A...	[more]
EF1A_DICDI	1.827e-56	86.17	Elongation factor 1-alpha OS=Dictyostelium discoid...	[more]
EF1A_ORYLA	2.382e-56	87.23	Elongation factor 1-alpha OS=Oryzias latipes GN=ee...	[more]
EF1A_ARTSA	4.048e-56	87.23	Elongation factor 1-alpha OS=Artemia salina PE=1 S...	[more]
EF1A_APIME	5.277e-56	87.23	Elongation factor 1-alpha OS=Apis mellifera PE=3 S...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-700-102-E02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY701055 ID=EY701055; Name=EY701055; organism=Citrus sinensis; type=EST; length=957bp
TTGCGGCCGCGCCGGCCCCCCAACNTGTGTTCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTACATTTGCATAATGGGTAAGGAGAACACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAGGTACTACTGCACCGTCA
TTGATGCTCCTGGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCTACCACCGGTGGTT
TTGAAGCTGGTATCTCCCGGGCAGGGTCAGACTCCTGGACCATGCTCGTT
GCTTGGCTTCCACCCTTGGGTGTGGAAGCCAGACTGAGGTGGGCTGGCGG
GTACGGACGGATGGATTGCCGGGCGACCCCCCAAGGTACGCCACAGGCGG
TACGCGTCCGACGCAAAATTTCGTGAAAGGGAGCGTCCTCCTTTCCGTGC
CCTTGAAGGAACCGGCGTTGGAGTGCCCCCCCCCCGCAGCACATTTCTCC
CCTTCCGTGGCCCCCACCTCCCGCGGTTTGCAGGGCGTTACCAGCCTGCA
GTCGCTTAAGTGGCCCACCCGGCGTTCGGCCGGGGGTTAGGGGGGGGGCG
TGGGGGGGGGGGGGGGGGCCGCGCACGCCGCGCCGCCCCGCCCCGGAGGG
GGCGGGCCCGCCCGGCCCGCCGCGCGGGCTGGCCGGCCCCCCCCCCCAGC
GCCGGCC