FC922018

Overview
NameFC922018
Unique NameFC922018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length210
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_SYNSC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9605) GN=ispG PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.682e-19
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = -1
Query:    1 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 207
            +A+RIG NHGSL++R++  YGD+P GMVESA+EF RIC +LDFHN L SMKAS   VM+ AYRL+   M
Sbjct:  162 KALRIGVNHGSLAERMLFTYGDTPEGMVESAMEFVRICHELDFHNILISMKASRAPVMLAAYRLMADTM 230          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_SYNPX (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain WH8102) GN=ispG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.266e-18
Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = -1
Query:    1 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 207
            +A+RIG NHGSL++R++  YGD+P+GMVESA+EF RIC +LDFHN + SMKAS   VM+ AYRL+   M
Sbjct:  162 KALRIGVNHGSLAERMLFTYGDTPKGMVESAMEFVRICDELDFHNIVISMKASRAPVMLAAYRLMADTM 230          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_CYAA5 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=ispG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.266e-18
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = -1
Query:    1 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 210
            G+A+RIG NHGSL++R++  YGD+P GMVESA+EF RIC  LDF+N + S+KAS   VM+ AYRL+V  M
Sbjct:  168 GKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICESLDFYNIVISLKASRVPVMLAAYRLMVKRM 237          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_BACV8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ispG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.266e-18
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = -1
Query:    1 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 204
            A+RIG NHGSLSDRIMS+YGD+P GMVES +EF RIC    F++ + S+KASN VVMV+  RLLV EM
Sbjct:  156 AIRIGVNHGSLSDRIMSHYGDTPEGMVESCMEFLRICVAEHFNDVVISIKASNTVVMVRTVRLLVKEM 223          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_ANAVT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.266e-18
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = -1
Query:    1 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 210
            G+A+RIG NHGSL++R++  YGD+P GMVESA+EF RIC  LDF N + SMKAS   VMV AYRL+   M
Sbjct:  172 GKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICESLDFRNIVISMKASRVPVMVAAYRLMAKRM 241          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_ANASP (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=ispG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.266e-18
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = -1
Query:    1 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 210
            G+A+RIG NHGSL++R++  YGD+P GMVESA+EF RIC  LDF N + SMKAS   VMV AYRL+   M
Sbjct:  172 GKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICESLDFRNIVISMKASRVPVMVAAYRLMAKRM 241          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_SYNS9 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9902) GN=ispG PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = -1
Query:    1 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 207
            +A+RIG NHGSL++R++  YGD+P+GMVESA+EF RIC  LDFHN + SMKAS   VM+ AYRL+   M
Sbjct:  162 KALRIGVNHGSLAERMLFTYGDTPKGMVESAMEFVRICDDLDFHNIVISMKASRAPVMLSAYRLMADTM 230          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_SYNS3 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9311) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.159e-18
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = -1
Query:    1 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 207
            +A+RIG NHGSL++R++  YGD+P+GMVESA+EF RIC  LDFHN + SMKAS   VM+ AYRL+   M
Sbjct:  162 KALRIGVNHGSLAERMLFTYGDTPQGMVESAMEFVRICDSLDFHNIVISMKASRAPVMLAAYRLMADTM 230          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_PARD8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.159e-18
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = -1
Query:    1 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 210
            G A+RIG NHGSLSDRIMS YGD+P GMV S +EF RICR+ +F + + S+KASN VVMV+  RLLV  M
Sbjct:  154 GTAIRIGVNHGSLSDRIMSRYGDTPEGMVASCMEFLRICREENFPDVVISIKASNTVVMVRTVRLLVRTM 223          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.159e-18
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = -1
Query:    1 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 210
            G+A+RIG NHGSL++R++  YGD+P GMVESA+EF RIC  LDF N + S+KAS   VM+ AYRL+V  M
Sbjct:  170 GKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICESLDFRNLVISLKASRVPVMLAAYRLMVKRM 239          
The following BLAST results are available for this feature:
BLAST of FC922018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ISPG_SYNSC5.682e-1962.324-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNPX1.266e-1860.874-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAA51.266e-1860.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACV81.266e-1866.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANAVT1.266e-1861.434-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANASP1.266e-1861.434-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNS91.653e-1860.874-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNS32.159e-1860.874-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PARD82.159e-1864.294-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAP82.159e-1860.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionC06056F05T7 RindPdigS Citrus sinensis cDNA clone C06056F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922018 ID=FC922018; Name=FC922018; organism=Citrus sinensis; type=EST; length=210bp
CATTTCAGCTACAAGCAGACGGTATGCTTGGACCATTACGACTGGGTTGC
TTGCTTTCATTGAAAAGAGAAAATTATGGAAGTCCAATTTCCGGCAGATT
CTTGCAAACTCAACGGCAGATTCAACCATTCCCCTAGGAGAATCCCCATA
GTAGCTCATGATACGATCTGAAAGGCTCCCATGGTTAGTCCCAATACGCA
CTGCCCTTCC
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