FC921983

Overview
NameFC921983
Unique NameFC921983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length257
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.216e-18
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            + GT T GGYSD +V  + FV++ P+  PLDA APLLCAGITVYSP+++YG+ +PG                KF KA G+KVTVI
Sbjct:  121 YKGTRTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVI 205          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.895e-18
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    8 GTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            G  T GG+SD +V +EH+V+R+P G PLD+ APLLCAG+TVYSP+  +GL+ PG                KFAKA G++VTVI
Sbjct:  204 GAATQGGFSDAIVVNEHYVLRVPAGLPLDSAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKFAKAFGMRVTVI 286          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.895e-18
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            + G  T GG+SD +V +EH+V+R+P G PLD  APLLCAG+TVYSP+  +GL+ PG                KFAKA G++VTVI
Sbjct:  199 YGGAATQGGFSDAIVVNEHYVLRVPAGLPLDGAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKFAKAFGMRVTVI 283          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.938e-18
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGTPLDAT-APLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DGT TYGGYSD MV DEHFV RIPEG PLD   +  LC G + +SPL++YGLDKPG+               KFAK  G+K+TVI
Sbjct:  131 DGTTTYGGYSDSMVVDEHFVTRIPEGLPLDGCGSSSLCWGYS-HSPLKYYGLDKPGLHVGVVGLGGLGHMVAKFAKTHGLKITVI 214          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.938e-18
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    2 HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            HDGT T GG++  MV D+ FVVRIPE  PL+  APLLCAG+TVYSP++ +G+ +PG                K AKA G+ VTVI
Sbjct:  126 HDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVI 210          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.938e-18
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    2 HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            HDGTI YGGYSD +V DE + V+IP   PL + APLLCAGI++YSP++++GL  P                 +FAKA G KVTV+
Sbjct:  130 HDGTINYGGYSDHIVVDERYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGPDKHVGIVGLGGLGHIGVRFAKAFGTKVTVV 214          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.938e-18
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    2 HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            HDGT T GG++  MV D+ FVVRIPE  PL+  APLLCAG+TVYSP++ +G+ +PG                K AKA G+ VTVI
Sbjct:  126 HDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVI 210          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.876e-17
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DGT  YGGYS+ +V D+ FV+R PE  P D+ APLLCAGITVYSP+++YG+ + G                K  KA G+KVTVI
Sbjct:  130 DGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVI 213          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.451e-17
Identity = 46/87 (52.87%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGL---DKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DG+ITYGGYS ++VA + FVVRIP+  PLDA APLLCAGITVYSP++ +G+   D  G                KF KA G+ VTVI
Sbjct:  128 DGSITYGGYSGMLVAHKRFVVRIPDTLPLDAAAPLLCAGITVYSPMKQHGMLQADAAGRRLGVVGLGGLGHVAVKFGKAFGLHVTVI 214          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.130e-17
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 2
Query:    2 HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            HDGT T GG++  MV D+ FVVRIPE  PL+  APLLCAG+TV+SP++ + + +PG                K AKA G+ VTVI
Sbjct:  126 HDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHLGVKIAKAFGLHVTVI 210          
The following BLAST results are available for this feature:
BLAST of FC921983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
MTDH1_STYHU2.216e-1850.59Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CAD8C_ORYSJ2.895e-1850.60Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CAD8B_ORYSJ2.895e-1849.41Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
MTDH3_STYHU4.938e-1855.29Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
CADH7_PICAB4.938e-1850.59Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic... [more]
CADH6_ARATH4.938e-1849.41Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CADH2_PICAB4.938e-1850.59Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]
CADH9_ARATH1.876e-1750.00Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
CADH6_ORYSJ2.451e-1752.87Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CADH_PINTA7.130e-1748.24Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]

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Properties
Property NameValue
Genbank descriptionC06056C01T7 RindPdigS Citrus sinensis cDNA clone C06056C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921983 ID=FC921983; Name=FC921983; organism=Citrus sinensis; type=EST; length=257bp
CCATGATGGAACCATCACATACGGAGGCTACTCTGACATTATGGTTGCCG
ATGAGCACTTTGTGGTCCGTATTCCTGAAGGCACACCACTTGACGCCACT
GCCCCTCTCCTCTGTGCTGGTATCACAGTCTACAGTCCGTTGAGATTCTA
TGGACTCGACAAGCCTGGTATGCATGTGGGTGTTGTCGGCTTGGGCGGTC
TAGGCCATGTCGCCGTCAAATTCGCAAAGGCTATGGGGGTCAAGGTGACT
GTGATCA
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