FC921983

Overview
NameFC921983
Unique NameFC921983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length257
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.130e-17
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 2
Query:    2 HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            HDGT T GG++  MV D+ FVVRIPE  PL+  APLLCAG+TV+SP++ + + +PG                K AKA G+ VTVI
Sbjct:  126 HDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVI 210          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.709e-16
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEG------TPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DG   +GG+S++ V ++ +VVRIP G       PLD  APLLCAG+TVY P+R  GLD+PG+               KF KA GVKVTVI
Sbjct:  125 DGATVHGGFSELAVVNQRYVVRIPGGGGGASPAPLDRLAPLLCAGVTVYCPMRRLGLDRPGVHLGVAGLGGLGHLAVKFGKAFGVKVTVI 214          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.709e-16
Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDK-PGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DGT   GGYSD++V D  FV+ IP+G P D+ APLLCAGITVYSP+++YG+ K  G                K  KA G++VTVI
Sbjct:  124 DGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVI 208          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.709e-16
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 2
Query:    2 HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            + G  T GG+SD+MV  + +VVR+P   P D  APLLCAG+TVYSP+  YGL+ PG                KF KA G+KVTVI
Sbjct:  124 YGGATTQGGFSDVMVVRQDYVVRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNGPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVI 208          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.621e-16
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 2
Query:    2 HDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            + G  T GG+SD+MV  + +V+R+P   P D  APLLCAG+TVYSP+  YGL+ PG                KF KA G+KVTVI
Sbjct:  124 YGGATTQGGFSDVMVVRQDYVLRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNAPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVI 208          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.883e-16
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DGT+T GGYS  +V  E +  +IP+G PL+  APLLCAGITVYSP+  + +++PG                KF KA G+KVTVI
Sbjct:  127 DGTVTKGGYSTHIVVHERYCFKIPDGYPLEKAAPLLCAGITVYSPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVI 210          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.756e-15
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGT--------PLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DGT TYGGYSD +V  + FVVR P           PLD+ APLLCAG+TVY+P+R +GL + G                KFA+A G++VTVI
Sbjct:  141 DGTRTYGGYSDAVVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAGKHVGVVGLGGLGHVAVKFARAFGMRVTVI 232          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH_MAIZE (Probable cinnamyl alcohol dehydrogenase OS=Zea mays GN=CAD PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.996e-15
Identity = 41/84 (48.81%), Postives = 50/84 (59.52%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DG  T GG++  MV D+ FVV+IP G   +  APLLCAG+TVYSPL+ +GL  PG+               K AKAMG  VTVI
Sbjct:  127 DGRPTQGGFASTMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLTNPGLRGGILGLGGVGHMGVKVAKAMGHHVTVI 210          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.110e-15
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 2
Query:    5 DGTI-TYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDK-PGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DGT    GGYSD++V D  FV+ IP+G P D+ APLLCAGITVYSP+++YG+ K  G                K  KA G++VTVI
Sbjct:  124 DGTSRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVI 209          
BLAST of FC921983 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.673e-15
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 2
Query:    5 DGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVI 256
            DG IT GG+++  V ++ FVV+IPEG   +  APLLCAG+TVYSPL  +GL  PG+               K AKA+G  VTVI
Sbjct:  128 DGKITQGGFAESTVVEQKFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKTPGLRGGILGLGGVGHMGVKVAKALGHHVTVI 211          
The following BLAST results are available for this feature:
BLAST of FC921983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CADH_PINRA7.130e-1748.24Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CADH9_ORYSJ2.709e-1647.78Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CADH3_ARATH2.709e-1649.41Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CAD8D_ORYSJ2.709e-1648.24Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]
CAD8A_ORYSJ4.621e-1647.06Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
CADH1_ORYSJ7.883e-1647.62Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
CADH7_ORYSJ1.756e-1546.74Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH_MAIZE2.996e-1548.81Probable cinnamyl alcohol dehydrogenase OS=Zea may... [more]
CADH2_ARATH5.110e-1548.84Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CADH_MEDSA6.673e-1547.62Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]

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Properties
Property NameValue
Genbank descriptionC06056C01T7 RindPdigS Citrus sinensis cDNA clone C06056C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921983 ID=FC921983; Name=FC921983; organism=Citrus sinensis; type=EST; length=257bp
CCATGATGGAACCATCACATACGGAGGCTACTCTGACATTATGGTTGCCG
ATGAGCACTTTGTGGTCCGTATTCCTGAAGGCACACCACTTGACGCCACT
GCCCCTCTCCTCTGTGCTGGTATCACAGTCTACAGTCCGTTGAGATTCTA
TGGACTCGACAAGCCTGGTATGCATGTGGGTGTTGTCGGCTTGGGCGGTC
TAGGCCATGTCGCCGTCAAATTCGCAAAGGCTATGGGGGTCAAGGTGACT
GTGATCA
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