CX047746

Overview
NameCX047746
Unique NameCX047746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: MDO1_PSEMR (Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.283e-13
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = -3
Query:  682 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAM 852
            CG SL+H +T +GYG ++   YWIV+NSWGSSWG+GGY+R+ R+V+ +  G CGIAM
Sbjct:  153 CGFSLNHAITIIGYGRDS---YWIVRNSWGSSWGQGGYVRIRRDVSHS-GGVCGIAM 205          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.314e-13
Identity = 36/57 (63.16%), Postives = 39/57 (68.42%), Query Frame = -3
Query:  670 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 840
            LDHGV AVG GT+NG DY+IVKNSWG SWG  GYI M RN        CGI+  ASY
Sbjct:  282 LDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLNGYIHMARN----KDNNCGISTMASY 334          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = -3
Query:  670 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            CGT +DH VTAVGYG   G  Y ++KNSWG  WGE GYIR+ R  +G   G CG+   + Y
Sbjct:  285 CGTKVDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRI-RRASGNSPGVCGVYRSSYY 344          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 35/56 (62.50%), Postives = 39/56 (69.64%), Query Frame = -3
Query:  673 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEAS 840
            ++H V AVGYGT+ G DYWIVKNSWG+ WGE GYIRM RN        CGIA  AS
Sbjct:  267 VNHAVLAVGYGTQGGTDYWIVKNSWGTYWGERGYIRMARNRG----NMCGIASLAS 318          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.248e-12
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = -3
Query:  670 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            CGT +DH VTAVGYG   G  Y ++KNSWG++WGE GYIR++R   G   G CG+   + Y
Sbjct:  285 CGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKR-APGNSPGVCGLYKSSYY 344          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.248e-12
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = -3
Query:  670 CGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            CGTS   ++H V AVGYG ENG  YW++KNSWG+ WG+ GY +ME          CGIA  ASY
Sbjct:  300 CGTSPMDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMG-----KNMCGIATCASY 358          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.629e-12
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = -3
Query:  670 GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 849
            G +L HGV  VGYG ENG  YWI+KN+WG+ WGE GYIR+ R+        CG+   ASY
Sbjct:  265 GDNLHHGVNVVGYGIENGQKYWIIKNTWGADWGESGYIRLIRDT----DHSCGVEKMASY 320          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = -3
Query:  670 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            C   ++HGV  +GYG  NG +YW+VKNSWGS++GE GYIRM RN        CGIA   SY
Sbjct:  271 CTQKVNHGVLVIGYGDLNGKEYWLVKNSWGSNFGEQGYIRMARNKG----NHCGIASYPSY 327          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = -3
Query:  670 SLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 843
            +LDHGV  VG+GT E+G DYW+VKNSWG++WG+ G+I+M RN       +CGIA  +SY
Sbjct:  314 NLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFIKMLRN----KENQCGIASASSY 368          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = -3
Query:  670 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            C  +++HGV  VGYG  NG DYW+VKNSWG ++G+ GYIRM RN        CGIA   SY
Sbjct:  272 CTQNVNHGVLVVGYGNLNGKDYWLVKNSWGLNFGDQGYIRMARNSG----NHCGIASYPSY 328          
The following BLAST results are available for this feature:
BLAST of CX047746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
MDO1_PSEMR3.283e-1357.89Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=... [more]
CYSP3_DICDI7.314e-1363.16Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
PAPA4_CARPA9.552e-1352.46Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
CATLL_FASHE9.552e-1362.50Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
PAPA3_CARPA1.248e-1252.46Caricain OS=Carica papaya PE=1 SV=2[more]
ORYC_ORYSJ1.248e-1253.13Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATLL_PHACE1.629e-1253.33Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
CATS_SAIBB3.630e-1254.10Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CATL_DROME3.630e-1255.93Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
CATS_CANFA6.191e-1254.10Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16C08-E15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047746 ID=CX047746; Name=CX047746; organism=Citrus sinensis; type=EST; length=854bp
TTTTTTTTTTTTTTTTTCGTTAAATATCAATTCATAAAAGCCTCCGCTGA
ATGATGCCAGGGATTTGGTGGAGGACATTGGAAATAGATAACAACAATTT
GTTTGTGCATTGTTCGGATTCAACGCAAATAGATAACTTACAACGCTATA
TACAAAACCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGT
ACATTAACGTTTGAAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGA
AACTCATTCACAAGCACGAATATCTTCATCCTCCCTTCGGCCTTCCACTG
CTCTTACAGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTC
CATGAGCCCAGTAAGGTTTAGCAGGGGTGCGTCGCAATGCCCTCACTCCC
AATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGAT
GGGATAGTCATGTGGGCAGCAGCTATAGTGGTCATCACAGCAGGTGGCAG
CCTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAG
ACACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACAC
AGCAGGAGGCTTTGTTGGAGATGGAGGAGACGGTCCGGGGTTGGGAGGAT
TTTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTG
CCCGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCACCCTC
TCCCCAGCTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCAT
TTTCTGTGCCATATCCAACAGCAGTAACACCATGGTCCAGAGATGTCCCA
CATC
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