CX047739

Overview
NameCX047739
Unique NameCX047739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.386e-46
Identity = 101/237 (42.62%), Postives = 142/237 (59.92%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL*VSRENH 782
            YDR +  FSP+GRLFQVEYA EA+K G+TA+G+K  +GVVL V+KRITS L+E  S+EKI +ID+HIG A SGL+ADAR LV+ ARVE Q +R SY E + VE  ++ +CD    +    +    RP+G +LLIAG D+  P L+ TDPSG   +  A AIG+G        +  Y +D+ ++ A  + +  L +  E K     +++  V+     +   E E V N +    E H
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTY---TQYGGVRPYGTALLIAGVDDKRPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYKAAEGKFDAGTLEVGVVSLQDKKFRKLEPEEVGNYVQQILEKH 240          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.386e-46
Identity = 96/212 (45.28%), Postives = 135/212 (63.68%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA 707
            YDR +  FSP+GRL+QVEYA EA+K G+TA+G+K  EGVVL V+KR+TS LLEP S+EKI +ID HIG A SGL+ DAR+LV+ ARVE+Q +R SY EP+ VE   + LCD    +    +   +RP+G +LLIAG  +    L+ TDPSGT  +  A  IG+G      + +++Y +D     A  + +  L    E K+  + ++I  V+
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCSEGVVLIVDKRVTSRLLEPVSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTY---TQFGGARPYGTALLIAGVSDGEARLFETDPSGTLLEYKATGIGTGRPAVIKTFEDEYQEDADFSGAIRLGIKALHAATEGKLDVSAIEIGVVS 217          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.427e-45
Identity = 93/211 (44.08%), Postives = 141/211 (66.82%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 704
            YDRG+  FSP+GRL+QVEYA EA+K G+ +IG++T++GVVL V+KRI SPL+E +SVEKI + D+HIG A +G +ADAR L++ AR + Q ++  Y EP+ VE+ T+A+ D   ++    +   +RPFGV+L+I G ++  P LY TDPSGT ++  A A+G+        L+E Y++ L  +    +AL  L  V ++ +TP  + +A V
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLMERTSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQY---TQVGGARPFGVALIIGGIEDGEPRLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASVNDDSLTPEGIGLATV 217          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.427e-45
Identity = 98/211 (46.45%), Postives = 132/211 (62.56%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 704
            YDR +  FSP+GRL+QVEYA EA+K G+TA+G+K  +GVVL V+KR++S LLE SS+EKI +IDEHIG A SGL+ DAR LV+ AR+E Q +R SY E + VE+  + LCD         +    RP+G +LLIAG  +    L+ TDPSGT  +  A  IG G   A    +E+Y  DL L++A  + L  L    E K   + V++  V
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCD---HMQTLTQYGGIRPYGTALLIAGVSDGESRLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLALKDAILLGLKALHSATEGKFDVDTVEMGIV 216          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.169e-45
Identity = 92/211 (43.60%), Postives = 140/211 (66.35%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 704
            YDRG+  FSP+GRL+QVEYA EA+K G+ ++G++T++GVV+A ++   SPL+E  S+EKI EID H+G A +G +ADAR L++ AR ++Q +R  Y EP +VES T+ + D   ++    +   +RPFGV+LL+AG ++  P L+ TDPSGT ++  A AIG   E   + L+E+Y + + L+    +AL  L  V E+ +    VDIA +
Sbjct:    9 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQY---TQTGGARPFGVALLVAGIEDGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRALASVNEDGLDATGVDIATI 216          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.406e-45
Identity = 91/210 (43.33%), Postives = 137/210 (65.24%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME--EKVTPNNVDI 695
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K GVV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P LY T+PSG +    A AIG G   A   L++ Y +DLT+++   +AL  L   ++  EK+TPN V+I
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.406e-45
Identity = 91/210 (43.33%), Postives = 137/210 (65.24%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME--EKVTPNNVDI 695
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K GVV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P LY T+PSG +    A AIG G   A   L++ Y +DLT+++   +AL  L   ++  EK+TPN V+I
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.406e-45
Identity = 91/210 (43.33%), Postives = 137/210 (65.24%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME--EKVTPNNVDI 695
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K GVV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P LY T+PSG +    A AIG G   A   L++ Y +DLT+++   +AL  L   ++  EK+TPN V+I
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.406e-45
Identity = 91/210 (43.33%), Postives = 137/210 (65.24%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME--EKVTPNNVDI 695
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K GVV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P LY T+PSG +    A AIG G   A   L++ Y +DLT+++   +AL  L   ++  EK+TPN V+I
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.406e-45
Identity = 91/210 (43.33%), Postives = 137/210 (65.24%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME--EKVTPNNVDI 695
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K GVV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P LY T+PSG +    A AIG G   A   L++ Y +DLT+++   +AL  L   ++  EK+TPN V+I
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
The following BLAST results are available for this feature:
BLAST of CX047739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
PSMA_METTE6.386e-4642.62Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_METMJ6.386e-4645.28Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSMA_NATPD2.427e-4544.08Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSMA_METB62.427e-4546.45Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSMA2_HALMA3.169e-4543.60Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSMA_SULIY5.406e-4543.33Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN5.406e-4543.33Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM5.406e-4543.33Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL5.406e-4543.33Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK5.406e-4543.33Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16C05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16C05-E9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047739 ID=CX047739; Name=CX047739; organism=Citrus sinensis; type=EST; length=837bp
CCGGTATCGACTCTTAAGCTCAGGTTTCCAGATCCAATCAGCAACAAAAC
ATGTTCCTTACAAGGACTGAGTATGATAGAGGAGTGAACACTTTCTCTCC
AGAAGGAAGATTGTTTCAGGTCGAATATGCTATTGAGGCCATTAAGCTGG
GTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGGGTTGTGCTTGCTGTC
GAGAAACGCATTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAGAAGAT
TATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGATTGCTG
ATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATCATAGA
TTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCACTCTG
TGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTCTCGAC
CATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGACCTAGC
CTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCAAAGGC
TATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCAATATA
ACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAATTTTG
AAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATCGCAAG
GGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGCTGTCA
TCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCTTCCCT
GGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGCAA
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