CX047739

Overview
NameCX047739
Unique NameCX047739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.406e-45
Identity = 91/210 (43.33%), Postives = 137/210 (65.24%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME--EKVTPNNVDI 695
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K GVV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P LY T+PSG +    A AIG G   A   L++ Y +DLT+++   +AL  L   ++  EK+TPN V+I
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.739e-43
Identity = 89/210 (42.38%), Postives = 135/210 (64.29%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME--EKVTPNNVDI 695
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K  VV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P L+ T+PSG +    A AIG G   A   L++ Y +DL ++E   +AL  L   ++  EK+TPN V+I
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLNVEETILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.739e-43
Identity = 90/233 (38.63%), Postives = 141/233 (60.52%), Query Frame = 3
Query:   66 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP-TYHLYTPSEVEAVINRL 761
            +E   G+ TFSP GRL Q+EYA  A   G+TA+G+K  +GVV+A EK+ TSPL +  ++ K+  +D+H+GC  SG+  D R LV+ AR   Q +R +Y EPM +   +Q +  ++  F E  +    RPFG SLL+AG+D  G  LY  DPSGTFW   A +IG GS  A + L+++Y  ++ +++A   AL  LK+  + ++T  N  + RV    + L T  +++  ++++
Sbjct:    2 SESSYGLTTFSPSGRLVQIEYATTAASKGTTALGVKATDGVVIAAEKKTTSPLADSLTLHKVFALDDHVGCTYSGIGPDCRVLVDAARRACQRYRLTYHEPMPI---SQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSRGNHLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTNEMEIEDAVHTALLTLKEGFDGRMTAENTQVGRVVEGRFELLTVEQLKDYLDQI 231          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.271e-43
Identity = 95/239 (39.75%), Postives = 144/239 (60.25%), Query Frame = 3
Query:   63 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPS-LYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSIL----KQVMEEK-----VTPNNVDIARVAPTYHLYTPSEVEAV 749
            +T YDR    FSPEG L+QV YA EA+K G T++G+KT EGVV+A EKR   PL++   ++KI +ID+HIG A +G+  D R L+++ARV T  HR  YGEP  VE   + + D+   +    +    RPFGV+L+ AG + +G + +Y TDP G ++   A AIGSG + A+   ++ Y  D++L+EA  +AL IL    ++ +E+K       P+ V++A +     ++T    E V
Sbjct:    9 QTAYDRAATIFSPEGDLYQVRYAFEAVKKGWTSLGIKTNEGVVIAAEKRFIGPLVDIDDIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAY---TQHGGVRPFGVALIFAGVNPDGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSDMSLEEATKLALKILYAIIRKTVEDKEKAIATLPDQVELAYITVKERMFTKMTKEQV 244          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.271e-43
Identity = 98/236 (41.53%), Postives = 147/236 (62.29%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIARVAPT------YHLYTPSEVEAVI 752
            YD     FSPEGRL+QVEYA+EAI    +AIG+ +K+GVVL  EK++TS LL+ S S EK+ +ID+H+ CA++G+++DA  L+  ARV+ Q + F Y EPM VE   Q+LCD    +    +    RPFGVS L AG D+ +G  LY +DPSG +    A A+G+ ++ A S L++ Y  D T +EA  +AL +L + M+   +T   +++A V  T      YH+++P  +  ++
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDDATREEAVELALKVLTKTMDSTSLTSEKLELAEVYLTPSKTVKYHVHSPESLTKLL 237          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.966e-43
Identity = 101/243 (41.56%), Postives = 150/243 (61.73%), Query Frame = 3
Query:   36 NQQQNMFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV---APTYHLYTPSEVEAVIN 755
            NQQQ        YDRG+  FSP+GRL+QVEYA EA+K G+ +IG++T EGVVL V+K+  SPLLE SSVEK+ +ID+H+G A +G +ADAR LV+ AR ++Q  R  Y EP+ V + T+++ D   ++    +   +RPFGV+LLIAG +   P L+ TDPSGT  +  A AIGS        L+++Y+  L++ +   +AL  L +  E+ ++ + V +  V     TY      E ++ I+
Sbjct:    5 NQQQ-------AYDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQY---TQVGGARPFGVALLIAGVEGGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNEGREDALSGDGVGVGIVDADTGTYRELAADESQSYID 237          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.966e-43
Identity = 101/243 (41.56%), Postives = 150/243 (61.73%), Query Frame = 3
Query:   36 NQQQNMFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV---APTYHLYTPSEVEAVIN 755
            NQQQ        YDRG+  FSP+GRL+QVEYA EA+K G+ +IG++T EGVVL V+K+  SPLLE SSVEK+ +ID+H+G A +G +ADAR LV+ AR ++Q  R  Y EP+ V + T+++ D   ++    +   +RPFGV+LLIAG +   P L+ TDPSGT  +  A AIGS        L+++Y+  L++ +   +AL  L +  E+ ++ + V +  V     TY      E ++ I+
Sbjct:    5 NQQQ-------AYDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQY---TQVGGARPFGVALLIAGVEGGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNEGREDALSGDGVGVGIVDADTGTYRELAADESQSYID 237          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.874e-43
Identity = 94/226 (41.59%), Postives = 140/226 (61.95%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVE 743
            YDR +  FSP+GRLFQVEYA EA+K GSTA+GLK   GV+L  +K+I S L+E +S+EKI  ID+++    SGL+ADAR L++ AR+  Q  + +YG  + +E+  + + D   ++    +    RP+GVSL+ AG D+ GP L+  DP+GT  +  A AIGSG +   S L+++Y + L+ +EA T+ +  LK  +EE       +IA   V   Y +Y   EV+
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGLKFSNGVLLISDKKIRSKLIEQNSLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---TQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEKEYKEGLSEKEAVTLGIKALKASLEEGEELKAPEIASITVGSKYRIYGAEEVK 230          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.060e-43
Identity = 88/230 (38.26%), Postives = 144/230 (62.61%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVIN 755
            YDR +  FSP+GRLFQVEYA EA+K GSTA+G+K K+GV L  EK++ S L+E +S+EKI  ID+ +    SGL+ADAR L++ AR+  Q  + +YG  M +E+  + + D   ++    +    RP+GVS++ AG D  GP L+  DP+GT  +    +IG+G +   + L+++Y ++L+  EA  + ++ LK  + ++ +    +IA  ++  T+H++T  EV   +N
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGIKFKDGVALISEKKVRSRLVEKTSLEKIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQY---TQYGGVRPYGVSIIFAGLDSIGPRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKENLSEDEAIRMGIAALKSAVADESSMKEPEIASIKMGETFHVFTSEEVSKYLN 234          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 6.608e-43
Identity = 93/226 (41.15%), Postives = 139/226 (61.50%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVE 743
            YDR +  FSP+GRLFQVEYA EA+K GSTA+G+K   GV+L  +K++ S L+E +S+EKI  ID+++    SGL+ADAR LV+ AR+  Q  + +YG  + +E+  + + D   ++    +    RP+GVSL+ AG D+ GP L+  DP+GT  +  A AIGSG +   S L+ +Y ++L  +EA T+ +  LK  +EE       +IA   V   Y +Y   EV+
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---TQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVK 230          
The following BLAST results are available for this feature:
BLAST of CX047739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
PSMA_SULIA5.406e-4543.33Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULSO1.739e-4342.38Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSA2_TRYBB1.739e-4338.63Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]
PSMA_AERPE2.271e-4339.75Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSA4_ARATH2.271e-4341.53Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]
PSMA_HALSA2.966e-4341.56Proteasome subunit alpha OS=Halobacterium salinari... [more]
PSMA_HALS32.966e-4341.56Proteasome subunit alpha OS=Halobacterium salinaru... [more]
PSMA_THEVO3.874e-4341.59Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSMA_PICTO5.060e-4338.26Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSMA_THEAC6.608e-4341.15Proteasome subunit alpha OS=Thermoplasma acidophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16C05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16C05-E9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047739 ID=CX047739; Name=CX047739; organism=Citrus sinensis; type=EST; length=837bp
CCGGTATCGACTCTTAAGCTCAGGTTTCCAGATCCAATCAGCAACAAAAC
ATGTTCCTTACAAGGACTGAGTATGATAGAGGAGTGAACACTTTCTCTCC
AGAAGGAAGATTGTTTCAGGTCGAATATGCTATTGAGGCCATTAAGCTGG
GTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGGGTTGTGCTTGCTGTC
GAGAAACGCATTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAGAAGAT
TATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGATTGCTG
ATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATCATAGA
TTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCACTCTG
TGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTCTCGAC
CATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGACCTAGC
CTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCAAAGGC
TATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCAATATA
ACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAATTTTG
AAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATCGCAAG
GGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGCTGTCA
TCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCTTCCCT
GGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGCAA
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