CX047739

Overview
NameCX047739
Unique NameCX047739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7_HUMAN (Proteasome subunit alpha type-7 OS=Homo sapiens GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.200e-38
Identity = 91/240 (37.92%), Postives = 140/240 (58.33%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 782
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ ++ VVL VEK+  + L +  +V KI  +D+++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG G++     L++ Y  +    +  TI L I   +   +    N+++A  R   +  +  P E+E  +  +   +E +
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEEN 239          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.873e-38
Identity = 92/231 (39.83%), Postives = 138/231 (59.74%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHL--YTPSEVEAVI 752
            YDR +  FSP+G LFQVEYA+EA++ G+ A+G++  + VVL VEK+ T+ L +  SV KI+ +D+HI  A +GL ADAR L+  ARVE Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D     PSLY TDPSGTF    A A G  S      L++ + K+ + QE   +A+  L +V+E      N+++A +     L     +E++A++
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKLQDTRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNF-KETSGQETVKLAIRALLEVVES--GGKNIEVAVMTKENGLRQLEEAEIDAIV 228          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSMA2_HALVO (Proteasome subunit alpha 2 OS=Halobacterium volcanii GN=psmA2 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.752e-38
Identity = 82/199 (41.21%), Postives = 123/199 (61.81%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 668
            YDRG + FSP+GR++QVEYA EA+K G+  +G++T +GVVLA  +   S L+E  S+EK+ ++D+ +G A +G +ADAR LV+ AR   Q     YGEP+ VE+ T+ + D      E  +   +RP+G SLLI G +     L+ TDPSGT  +  A AIG   E   ++L++ Y +DL+L++   +A+  L    EE
Sbjct:    9 YDRGTSLFSPDGRIYQVEYAREAVKRGAPVLGVRTADGVVLAALRSTPSELMEAESIEKLHKLDDALGAATAGHVADARKLVDFARTTAQREHLRYGEPIGVETLTKTITD---NIQESTQSGGTRPYGASLLIGGVENGSGRLFATDPSGTPQEWKAVAIGGHREDVQAALEDGYAEDLSLEDGLALAVEALVAADEE 204          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.752e-38
Identity = 94/246 (38.21%), Postives = 142/246 (57.72%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCA------MSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 782
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ ++ VVL VEK+  + L +  +V KI  +D+++  A      +SGL ADAR ++  ARVE Q+HR + G+P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG G++     L++ Y  D    +  TI L I   +   +    N+++A  R      + +P E+E  +  +   +E +
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAVVASVSGLTADARIVINRARVECQSHRLTVGDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILSPEEIEKYVAEIEKEKEEN 245          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7_CAEEL (Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.901e-38
Identity = 83/210 (39.52%), Postives = 130/210 (61.90%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 698
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ K+ +V+ VEK+    L +  ++ KI  ID+H+  A +GL ADAR LV+ AR+E Q+++ +  +P+TV   ++ + +   RF +       RPFG+S+LI G D +G P L+ T+PSG +++  A A G G +     L+EQY+++ T+ EA T+ L +            N++IA
Sbjct:    4 YDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGR---RPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKLVVKSLAQVVPPGSQNIEIA 210          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.401e-38
Identity = 91/245 (37.14%), Postives = 142/245 (57.96%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSS--VEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAI-GSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVME-EKVTPNNVDIARVAP-----TYHLYTPSEVEAVINRL*VSRE 776
            YD+    FSPEGR++QVEYA+ AI+     +G+  K+G+VLA EK+ T+ LL+ S+   EK+ +IDEH+ CA++G+ +DA  L+ +AR+ +Q   + Y EPM VE     +CD    +    +    RPFGVS L AG D + G  LY +DPSG F    A +I G  S+ A S L+  Y  D++L+EA  +AL +L + M+   +    ++ +          YH++T +E++A I    + +E
Sbjct:    5 YDQRTTIFSPEGRVYQVEYAMTAIRHAGATVGILAKDGIVLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQEPMPVEQLVSQICDTKQGY---TQYGGLRPFGVSFLYAGWDRHYGFQLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYKPDISLKEALQLALKVLTKTMDRSNINSEKLEFSYFTKQGDNVVYHIFTAAELDAFIKETDLEQE 246          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.359e-38
Identity = 81/228 (35.53%), Postives = 137/228 (60.09%), Query Frame = 3
Query:   66 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA--PTYHLYTPSEVE 743
            ++Y   + TFSP G+L Q+E+A+ A+  G T++G+K   GVV+A EK++ S L++ +SV+KI  +  +IG   SG+  D R LV  +R + + +   Y EP+ V   TQ + + A    E  +    RPFGVSLL+AG D+ GP LY  DPSG+++   A A+G     A + L+++Y +D+ L +A   A+  LK+  E +++  N++I ++     + + TP+E++
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPV---TQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSKNIEIGKIGTDKVFRVLTPAEID 228          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.359e-38
Identity = 81/228 (35.53%), Postives = 137/228 (60.09%), Query Frame = 3
Query:   66 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA--PTYHLYTPSEVE 743
            ++Y   + TFSP G+L Q+E+A+ A+  G T++G+K   GVV+A EK++ S L++ +SV+KI  +  +IG   SG+  D R LV  +R + + +   Y EP+ V   TQ + + A    E  +    RPFGVSLL+AG D+ GP LY  DPSG+++   A A+G     A + L+++Y +D+ L +A   A+  LK+  E +++  N++I ++     + + TP+E++
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPV---TQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSKNIEIGKIGADKVFRVLTPAEID 228          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.862e-37
Identity = 92/235 (39.15%), Postives = 137/235 (58.30%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG--PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA---RVAPTYHLYTPSEVEAVINRL 761
            YDR +  FSP+G LFQVEYA+EA++ G+ A+G++  + VVLAVEK+ T  L +  S  KI+ +D HI  A +GL ADAR L+  AR+E Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D     PSLY TDPSGTF    A A G  S      L++ Y K+ + QE   +A+  L +V+E      N+++A   R          +E++A++ ++
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNY-KESSGQETIKLAIRALLEVVES--GGKNIEVAVMTREETGLRQLEEAEIDAIVAKI 232          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.432e-37
Identity = 91/240 (37.92%), Postives = 138/240 (57.50%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 782
            YDR +  FSP+G LFQVEYA EAIK GSTA+G++ ++ VVL VEK+  + L +  +V KI  +D+++  A +GL ADAR ++  ARVE Q+HR +  + +TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG G++     L++ Y  +    +  TI L I   +   +    N+++A  R      +  P E+E  +  +   +E +
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAIKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDSVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEEYVAEIEKEKEEN 239          
The following BLAST results are available for this feature:
BLAST of CX047739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
PSA7_HUMAN2.200e-3837.92Proteasome subunit alpha type-7 OS=Homo sapiens GN... [more]
PSA7_CICAR2.873e-3839.83Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSMA2_HALVO3.752e-3841.21Proteasome subunit alpha 2 OS=Halobacterium volcan... [more]
PSA7_RAT3.752e-3838.21Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]
PSA7_CAEEL4.901e-3839.52Proteasome subunit alpha type-7 OS=Caenorhabditis ... [more]
PSA4_DICDI6.401e-3837.14Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSA2B_ARATH8.359e-3835.53Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2A_ARATH8.359e-3835.53Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSA7B_ARATH1.862e-3739.15Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]
PSA7_PONAB2.432e-3737.92Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16C05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16C05-E9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047739 ID=CX047739; Name=CX047739; organism=Citrus sinensis; type=EST; length=837bp
CCGGTATCGACTCTTAAGCTCAGGTTTCCAGATCCAATCAGCAACAAAAC
ATGTTCCTTACAAGGACTGAGTATGATAGAGGAGTGAACACTTTCTCTCC
AGAAGGAAGATTGTTTCAGGTCGAATATGCTATTGAGGCCATTAAGCTGG
GTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGGGTTGTGCTTGCTGTC
GAGAAACGCATTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAGAAGAT
TATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGATTGCTG
ATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATCATAGA
TTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCACTCTG
TGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTCTCGAC
CATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGACCTAGC
CTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCAAAGGC
TATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCAATATA
ACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAATTTTG
AAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATCGCAAG
GGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGCTGTCA
TCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCTTCCCT
GGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGCAA
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