CX047719

Overview
NameCX047719
Unique NameCX047719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2_EUCGG (50S ribosomal protein L2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.540e-39
Identity = 84/96 (87.50%), Postives = 86/96 (89.58%), Query Frame = 2 
Query:  524 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGN  VNQK LG AGSKCWLGKRPVVRGVVMNPVD
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVEVNQKKLGRAGSKCWLGKRPVVRGVVMNPVD 227
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2_CERDE (50S ribosomal protein L2, chloroplastic OS=Ceratophyllum demersum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.540e-39
Identity = 82/96 (85.42%), Postives = 87/96 (90.62%), Query Frame = 2 
Query:  524 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            +MPLGT+IHN+E  L +GGQLARAAGAVAKLIAKEGKSATL+ PSG VRLISKNCSATVG VGN GVNQK LG AGSKCWLGKRPVVRGVVMNPVD
Sbjct:  132 DMPLGTAIHNVEITLGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVGVNQKRLGRAGSKCWLGKRPVVRGVVMNPVD 227
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2_CAPBU (50S ribosomal protein L2, chloroplastic OS=Capsella bursa-pastoris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.540e-39
Identity = 85/96 (88.54%), Postives = 87/96 (90.62%), Query Frame = 2 
Query:  524 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGN GVNQKSLG AGSK WLGKRPVVRGVVMNPVD
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVD 227
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2A_COFAR (50S ribosomal protein L2-A, chloroplastic OS=Coffea arabica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.540e-39
Identity = 85/96 (88.54%), Postives = 87/96 (90.62%), Query Frame = 2 
Query:  524 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGN GVNQKSLG AGSK WLGKRPVVRGVVMNPVD
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVD 227
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2A_ATRBE (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.540e-39
Identity = 85/96 (88.54%), Postives = 87/96 (90.62%), Query Frame = 2 
Query:  524 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGN GVNQKSLG AGSK WLGKRPVVRGVVMNPVD
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVD 227
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2_PIPCE (50S ribosomal protein L2, chloroplastic OS=Piper cenocladum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.236e-39
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 2 
Query:  524 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            +MPLGT+IHNIE  L KGGQLARAAGAV+KLIAKEGKSATL+ PSG VRLISKNCSATVG VGN  VNQKSLG AGSKCWLGKRPVVRGVVMNPVD
Sbjct:  132 DMPLGTAIHNIEITLEKGGQLARAAGAVSKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVEVNQKSLGRAGSKCWLGKRPVVRGVVMNPVD 227
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2_HELAN (50S ribosomal protein L2, chloroplastic OS=Helianthus annuus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.234e-38
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 2 
Query:  524 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGN GVNQK+LG AGSK WLGKRPVVRGVVMNPVD
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKRWLGKRPVVRGVVMNPVD 227
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2_CALFG (50S ribosomal protein L2, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl2 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.234e-38
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 2 
Query:  524 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATL+ PSG VRLISKNCSATVG VGN GVNQKSLG AGSK WLGKRPVVRGVVMNPVD
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVD 227
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2_ILLOL (50S ribosomal protein L2, chloroplastic OS=Illicium oligandrum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.612e-38
Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 2 
Query:  524 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            +M LGT+IHNIE  L KGGQLARAAG VAKLIAKEGKSATL+ PSG VRL+SKNCSATVG VGN GVNQKSLG AGSKCWLGKRPVVRGVVMNPVD
Sbjct:  134 DMSLGTAIHNIEITLGKGGQLARAAGTVAKLIAKEGKSATLRLPSGEVRLVSKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVD 229
[Close]
BLAST of CX047719 vs. ExPASy Swiss-Prot
Match: RK2_PANGI (50S ribosomal protein L2, chloroplastic OS=Panax ginseng GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.750e-38
Identity = 84/96 (87.50%), Postives = 86/96 (89.58%), Query Frame = 2 
Query:  524 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNPVD 811
            +MPLGT+IHNIE    KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGN GVNQKSLG AGSK WLGKRPVVRGVVMNPVD
Sbjct:  132 DMPLGTAIHNIEITRGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVD 227
The following BLAST results are available for this feature:
BLAST of CX047719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_EUCGG5.540e-3987.5050S ribosomal protein L2, chloroplastic OS=Eucalyp... [more]
RK2_CERDE5.540e-3985.4250S ribosomal protein L2, chloroplastic OS=Ceratop... [more]
RK2_CAPBU5.540e-3988.5450S ribosomal protein L2, chloroplastic OS=Capsell... [more]
RK2A_COFAR5.540e-3988.5450S ribosomal protein L2-A, chloroplastic OS=Coffe... [more]
RK2A_ATRBE5.540e-3988.5450S ribosomal protein L2-A, chloroplastic OS=Atrop... [more]
RK2_PIPCE7.236e-3986.4650S ribosomal protein L2, chloroplastic OS=Piper c... [more]
RK2_HELAN1.234e-3887.5050S ribosomal protein L2, chloroplastic OS=Heliant... [more]
RK2_CALFG1.234e-3887.5050S ribosomal protein L2, chloroplastic OS=Calycan... [more]
RK2_ILLOL1.612e-3885.4250S ribosomal protein L2, chloroplastic OS=Illiciu... [more]
RK2_PANGI2.750e-3887.5050S ribosomal protein L2, chloroplastic OS=Panax g... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16B03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16B03-C5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047719 ID=CX047719; Name=CX047719; organism=Citrus sinensis; type=EST; length=814bp
GAAAGGTGCGGATCTCCGCCATCCTTGCTCAGGCTTTTGCGCGATTGGGC
GATGAGGGTTTTGTCTCATCTACCTGATGGTACTTTTCATCACGCGACTC
TTGCGAGACATCTTCTTTTTTAGAAATTTATTCTTCAGGCCGCTACCGAT
TCTCTTCCAGTTGTTCTCACTCCGGGTCTTTTGGAGGTTTGGTAACAACT
TGACTGAGTCATGGGTGTGGTTACTAGTACAAGCCCCTTTCAGTGATCCA
GGTTTGGGAAGCGAGAAGAAGGCGAACATAGTATGGTTTACCTGTGGGCG
GCCGCTCGGGTTCTACAGCTCTTGGCCTACGTTCACACTTACGCTTCATA
TGCTGGTGTGGCTGTCGGCTGACTGAGAGGGTGGGTGTATCCGCGAGGAC
GCTTTATAAACTCCGCGGCTTGGTCATTGCCGACCAAGCTACAGAGTACT
GAAACATCTGTGCTCAATGGGAGTGAAGGATCTTTTTGATCAATCAAAAA
GACAAGACGAATCTACTTCACCCAATATGCCCTTAGGCACGTCCATACAT
AACATAGAAAGAAGACTAGTAAAGGGTGGACAATTAGCTAGAGCAGCGGG
TGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAAT
GACCTTCTGGGTGGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTC
GGATAAGTGGGGAATGCTGGGGTGAACCAGAAAAGTTTGGGTGGAGCCGG
ATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGA
ACCCTGTAGACCCC
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