CX047694

Overview
NameCX047694
Unique NameCX047694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047694 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.673e-12
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  490 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 732
            GA   + L   G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  170 GAQVAQFLVKRGLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CX047694 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = -1
Query:  487 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 732
            GA   + L   G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  170 GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CX047694 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 39/81 (48.15%), Postives = 47/81 (58.02%), Query Frame = -1
Query:  490 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 732
            GA   + L   G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  170 GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CX047694 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  487 ATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 729
            A   ++L   GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  178 AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CX047694 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 41/82 (50.00%), Postives = 49/82 (59.76%), Query Frame = -1
Query:  496 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 735
            FGA   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  241 FGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of CX047694 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = -1
Query:  484 PGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 681
            PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  227 PGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CX047694 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = -1
Query:  484 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 732
            GA   + L   G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  169 GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
The following BLAST results are available for this feature:
BLAST of CX047694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
THI4_PYRHO1.673e-1248.15Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU3.728e-1246.34Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB8.305e-1248.15Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE8.305e-1245.68Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_YEAST3.156e-1150.00Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_HALWD3.156e-1146.97Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_PYRKO4.122e-1143.37Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16A01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16A01-A1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047694 ID=CX047694; Name=CX047694; organism=Citrus sinensis; type=EST; length=735bp
TTTTTTTTTTTTTTAAGCTCAGATCTTCATCATTGATCTTAATCACATCA
GCACTTTCCCATTGGCTGATGCCTCAAGTTATAAACATACAAAGCAAAGA
AAAGGGAACAGCCCAAGGGCAGTCTTACACATAACACAGATAACAAGGAC
TAGATACGCAACTGCAAATTCACCTCCGAAAAACTCACAACGGTTTCTTA
CAAGAGGAGAAAGAAATTAAAATTAAAGGTTCCATGATGGACCGGAAACA
AACACTTTATTCACAAAACCTCACAACATTATCTCATTATTCGCATCAAC
CATCCATCACAACCACCTAAATACAACTACTTTTTTGCCAGAGTTTATTT
GCATGCACACAGCTGATGAGTGATGATGCCTGTTATTACCAAATTAAGCA
TCAGCAGTCTCAGCAGAATCAGCTGCAGCTAAGATCAGCTCAGGGTGAAC
GCCTCCCACATATGTACCGTCTAATGCATTCGGCTGGCCCAGTGACTTCA
ACGCCAAATGCGCAGCCTTCTGCCCCGATATCATCATTGCTCCAAATGTT
GGCCCCATTCGAGGAGCACCATCAATCTCGGCAACTTCCATGCCGGTAAC
TATCATACCAGGCACAACCTCCCTGGTCAGCCTCACAATAGCATCTTCTG
CAGAGTTCATGTCCAGTGCCTTCATTCCAGGCACTTCCTCAATCATTCCG
ATACTCTTCAACCTCTTTACTCCAGTGGCCCCAAA
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