CX047687

Overview
NameCX047687
Unique NameCX047687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.466e-47
Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 3
Query:   75 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 515
            L  NP  G  AG ++E N FEW   I+GP DT +E G F AI+SFP +YP SPP ++FT E++HPN+YPDGRVCISILH PGDDP GYE ++ERW PV +VE I+LS++SML+ PNDES ANV+A+K WRD R+ F K   + V++S
Sbjct:   16 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQIVQKS 162          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.750e-47
Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 3
Query:   75 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 515
            L  NP  G  AG ++E N FEW   I+GP DT +E G F AI+SFP +YP SPP ++FT E++HPN+YPDGRVCISILH PGDDP GYE ++ERW PV +VE I+LS++SML+ PNDES ANV+A+K WRD R+ F K   + V++S
Sbjct:   16 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.750e-47
Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 3
Query:   75 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 515
            L  NP  G  AG ++E N FEW   I+GP DT +E G F AI+SFP +YP SPP ++FT E++HPN+YPDGRVCISILH PGDDP GYE ++ERW PV +VE I+LS++SML+ PNDES ANV+A+K WRD R+ F K   + V++S
Sbjct:   16 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.750e-47
Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 3
Query:   75 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 515
            L  NP  G  AG ++E N FEW   I+GP DT +E G F AI+SFP +YP SPP ++FT E++HPN+YPDGRVCISILH PGDDP GYE ++ERW PV +VE I+LS++SML+ PNDES ANV+A+K WRD R+ F K   + V++S
Sbjct:   16 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.537e-42
Identity = 82/147 (55.78%), Postives = 100/147 (68.03%), Query Frame = 3
Query:   75 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 515
            L K+   G  AG   E NIF W   I GPPDT Y  G FNA + FP +YP SPP + FT  I HPN+YP+G VCISILH PGDDPN YELA ERW PV +VE I+LS++SMLS PN ES AN++A   WRD R +F+++V   + +S
Sbjct:   16 LIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKS 162          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.104e-41
Identity = 78/148 (52.70%), Postives = 104/148 (70.27%), Query Frame = 3
Query:   72 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 515
            +L +N   G +AG  +E + F W   I GP  T +EGG + A + FPS+YP  PPT+KF  E +HPNVY DG VCISILH PGDDPN YE +SERW PV +VE I+LS++SML+ PNDES AN++A K WR+ R+++ + V R  R++
Sbjct:   16 ELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARKT 163          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.748e-41
Identity = 77/141 (54.61%), Postives = 102/141 (72.34%), Query Frame = 3
Query:   75 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAA---KEWRDRRDDFKK 488
            L + PV GF   LVDE++++ W V I GPP+TLYEGG+F A + FP +YP SPPT +F T++WHPN+Y +G VCISILHPP DDP   EL SERW P   V +I+LS+IS+L+ PN  SPANV+A+   ++WRD +   K+
Sbjct:   20 LQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKE 160          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.748e-41
Identity = 77/141 (54.61%), Postives = 102/141 (72.34%), Query Frame = 3
Query:   75 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAA---KEWRDRRDDFKK 488
            L + PV GF   LVDE++++ W V I GPP+TLYEGG+F A + FP +YP SPPT +F T++WHPN+Y +G VCISILHPP DDP   EL SERW P   V +I+LS+IS+L+ PN  SPANV+A+   ++WRD +   K+
Sbjct:   20 LQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKE 160          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.748e-41
Identity = 77/141 (54.61%), Postives = 102/141 (72.34%), Query Frame = 3
Query:   75 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAA---KEWRDRRDDFKK 488
            L + PV GF   LVDE++++ W V I GPP+TLYEGG+F A + FP +YP SPPT +F T++WHPN+Y +G VCISILHPP DDP   EL SERW P   V +I+LS+IS+L+ PN  SPANV+A+   ++WRD +   K+
Sbjct:   20 LQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKE 160          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 72/136 (52.94%), Postives = 96/136 (70.59%), Query Frame = 3
Query:   75 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAA---KEWRDRR 473
            L + PV GF   LVDE +++ W V I GPP+T YEGG+F A + FP +YP SPP  +F T++WHPN+Y  G VCISILHPP DDP   EL SERW P   V +I+LS+IS+L+ PN  SPANV+A+   ++W++ +
Sbjct:   20 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESK 155          
The following BLAST results are available for this feature:
BLAST of CX047687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
UB2G2_BOVIN7.466e-4758.50Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UB2G2_PONAB9.750e-4758.50Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE9.750e-4758.50Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN9.750e-4758.50Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UBC7_YEAST5.537e-4255.78Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC7_SCHPO2.104e-4152.70Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UB2R2_RABIT2.748e-4154.61Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE2.748e-4154.61Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN2.748e-4154.61Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UB2R1_MOUSE7.483e-3952.94Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15H09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15H09-P18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047687 ID=CX047687; Name=CX047687; organism=Citrus sinensis; type=EST; length=713bp
TCCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAGGCAAGTCTC
CTCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGTTGCTGGGTT
TTCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGAGTGTTACAA
TTATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTCAATGCCATT
ATGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGTGAAGTTTAC
AACAGAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTGTCTGCATAT
CAATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAGCTTGCAAGT
GAGCGCTGGATGCCTGTTCATACTGTTGAAAGTATCGTTTTGAGTATCAT
ATCAATGCTTTCCGGTCCTAATGATGAATCTCCTGCAAATGTCGAAGCTG
CAAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAAGTAGGCCGC
TGTGTGAGAAGATCACAAGAAATGTTGTAATCCAACTGCAGGCACTCTTT
TTTTCTCTACCTATGTGTTTGTACGGGAAATGTCTTGATTTAATTGTGTG
GGGGGAACTGGGTTCTGTGGGTAATGTCAATGTGCTTGGTCTTGTGTAGA
CTGGCATTTTGAAGTTCTCTCAACCATCTCTCTCGTTTTCTCTGCATGGT
CAAGTCACTGCCT
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