CX047686

Overview
NameCX047686
Unique NameCX047686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.123e-25
Identity = 57/147 (38.78%), Postives = 85/147 (57.82%), Query Frame = -2
Query:  196 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 636
            L ++P  G S G   E NI +W+  I GP  T +E G F  ++ F   YPN PPTV+F ++++HPNVY DG +C+ IL               RW P + V SI+ SI S+L  PN  SPAN +AA+ +++ + +++K+V   V +S
Sbjct:   16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25
Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = -2
Query:  190 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 585
            N+  W+  IIGP DT YE G F  ++ F   YPN PP VKF +E++HPNVY +G +C+ IL               RW P + V SI+ SI S+ + PN  SPANVEAA  ++D +  + K+V   V +S E
Sbjct:   32 NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = -2
Query:  190 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 585
            N+  W+  IIGP DT YE G F  ++ F  +YPN PP VKF +E++HPNVY +G +C+ IL               RW P + V SI+ SI S+ + PN  SPANVEAA  ++D +  + K+V   V +S E
Sbjct:   32 NVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSWE 150          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25
Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = -2
Query:  190 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 585
            N+  W+  IIGP DT YE G F  ++ F   YPN PP VKF +E++HPNVY +G +C+ IL               RW P + V SI+ SI S+ + PN  SPANVEAA  ++D +  + K+V   V +S E
Sbjct:   32 NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 58/147 (39.46%), Postives = 84/147 (57.14%), Query Frame = -2
Query:  196 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 636
            L ++P AG S G   E NI  W+  I GP  T +E G F   + F   YPN PPTV+F ++++HPNVY DG +C+ IL               RW P + V SI+ SI S+L  PN  SPAN +AA+ +++ + +++K+V   V +S
Sbjct:   16 LQEDPPAGVS-GAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 58/147 (39.46%), Postives = 84/147 (57.14%), Query Frame = -2
Query:  196 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 636
            L ++P AG S G   E NI  W+  I GP  T +E G F   + F   YPN PPTV+F ++++HPNVY DG +C+ IL               RW P + V SI+ SI S+L  PN  SPAN +AA+ +++ + +++K+V   V +S
Sbjct:   16 LQEDPPAGVS-GAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 56/147 (38.10%), Postives = 85/147 (57.82%), Query Frame = -2
Query:  196 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 636
            L ++P AG S G   + NI  W+  I GP DT ++GG F   + F  +YPN PPTV+F + ++HPN+Y DG +C+ IL               +W P++ V +I+ SI S+L  PN  SPAN EAA+ + + + ++ +KV   V +S
Sbjct:   16 LQQDPPAGIS-GAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQS 148          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = -2
Query:  190 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 585
            N+  W+  IIGP DT YE G F  ++ F   YPN PP VKF +E++HPNVY +G +C+ IL               RW P + V SI+ SI S+ + PN  SPANVEAA  ++D +  + K+V   V +S E
Sbjct:   32 NVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSWE 150          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 54/146 (36.99%), Postives = 88/146 (60.27%), Query Frame = -2
Query:  184 AGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISIL-HPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEML 618
            + +  G ++  +   W +      D+LY G    A+M FPS+YP  PPT+KF ++++HPN+Y DG++CISIL      D + +    ++W PV  + +IV+SI+ +L+ PN  SPANV+A+  +RD  +++ K+V R  R   E L
Sbjct:   53 SAYPRGSMENRDYKVWDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRIAREEDEKL 198          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 56/145 (38.62%), Postives = 83/145 (57.24%), Query Frame = -2
Query:  196 KNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 630
            ++P  G SA  V + N+  W+  IIGP +T +E G F  ++ F   YPN PP VKF ++++HPNVY  G +C+ IL               RW P + V +I+ S+ S+L+ PN  SPANVEA+  ++D R  ++K+V   V  S
Sbjct:   18 QDPPQGVSASPVAD-NVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDIL-------------QNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEAS 148          
The following BLAST results are available for this feature:
BLAST of CX047686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
UBE2B_BOVIN2.123e-2538.78Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC2_YEAST2.772e-2542.42Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_CANGA2.772e-2542.42Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_ASHGO2.772e-2542.42Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBE2A_MOUSE4.729e-2539.46Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN4.729e-2539.46Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_WHEAT4.729e-2538.10Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_KLULA4.729e-2542.42Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
Y1A1_ENCCU6.176e-2536.99Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC2_YARLI6.176e-2538.62Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15H09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15H09-P18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047686 ID=CX047686; Name=CX047686; organism=Citrus sinensis; type=EST; length=709bp
CAGTGACTTGACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTC
AAAATGCCAGTCTACACAAGACCAAGCACATTGACATTACCCACAGAACC
CAGTTCCCCCCACACAATTAAATCAAGACATTTCCCGTACAAACACATAG
GTAGAGAAAAAAAGAGTGCCTGCAGTTGGATTACAACATTTCTTGTGATC
TTCTCACACAGCGGCCTACTTTCTTCTTGAAGTCATCTCTCCTGTCTCTC
CATTCTTTTGCAGCTTCGACATTTGCAGGAGATTCATCATTAGGACCGGA
AAGCATTGATATGATACTCAAAACGATACTTTCAACAGTATGAACAGGCA
TCCAGCGCTCACTTGCAAGCTCATATCCATTAGGGTCGTCACCTGGAGGA
TGAAGGATTGATATGCAGACACGCCCATCCGGATAGACATTAGGATGCCA
AATCTCTGTTGTAAACTTCACTGTAGGTGGGCTATTAGGGTAGTTTGATG
GAAAGCTCATAATGGCATTGAAAAATCCCCCCTCATAAAGAGTATCAGGT
GGTCCAATAATTGTAACACTCCATTCAAAGATATTTGTCTCATCCACCAA
CCCGGCAGAAAACCCAGCAACAGGGTTCTTACAAAGATCTTTTAGTTGTT
TTTGCAAGAGGAGACTTGCCTGAGATGCCGCCATGATTTTAGTAGAGAGA
GAGAGCTGG
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