CX047674

Overview
NameCX047674
Unique NameCX047674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length270
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   44 LTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   44 LTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   44 LTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.277e-18
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   44 LTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.277e-18
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   44 LTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.277e-18
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   10 LTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.277e-18
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   44 LTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.668e-18
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ G+ K + +K+HGF
Sbjct:   44 LTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.179e-18
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L ++G+ K E +K+HGF
Sbjct:   41 LTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.717e-18
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L + G+ K + +K+HGF
Sbjct:   41 LTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
The following BLAST results are available for this feature:
BLAST of CX047674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
EIF1B_MOUSE1.155e-1958.57Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA1.155e-1958.57Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN1.155e-1958.57Eukaryotic translation initiation factor 1b OS=Hom... [more]
EIF1_PONAB1.277e-1855.71Eukaryotic translation initiation factor 1 OS=Pong... [more]
EIF1_HUMAN1.277e-1855.71Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_CHICK1.277e-1855.71Eukaryotic translation initiation factor 1 (Fragme... [more]
EIF1_BOVIN1.277e-1855.71Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1_MOUSE1.668e-1854.29Eukaryotic translation initiation factor 1 OS=Mus ... [more]
SUI1_ANOGA2.179e-1855.71Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_DROME3.717e-1854.29Protein translation factor SUI1 homolog OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15G12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15G12-N24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047674 ID=CX047674; Name=CX047674; organism=Citrus sinensis; type=EST; length=270bp
CTGCACTGACGAACGCGGGTCACCAAATGTGCAGAAACGGAAGTTGCTGT
TTACTTAAAAGCCATGCATTTTGATATGTTCCTTCTTCACAATCCCAGCC
TGAACAAGGAACGTAGATACATTCTTCCGCTGGTCACCTTGGAGTTGAAT
GACCTGTCCTAGTTCAGGATCCTGGACCACTGTTCCATTGCAGCAAAATT
CCTTTTTGAGGTCCTTGAGGATTTTGTTGTAACTAAATTCTTTCTTCAAC
CCCTGGACAGTTGTCAGCCT
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