CX047667

Overview
NameCX047667
Unique NameCX047667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047667 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = -1 
Query:  248 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSL 544
            RS +A LQF V RV   LK+              Y AA+LE L AEVLE+A N ++  K   I PRH+ LA+R D E++ L  G TI+  GV+P   K L
Sbjct:   18 RSEKAALQFSVSRVEYSLKKGRYCRRLGATAPV-YLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKEL 116
The following BLAST results are available for this feature:
BLAST of CX047667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A2_LILLO8.123e-1143.00Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15G06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15G06-N12-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047667 ID=CX047667; Name=CX047667; organism=Citrus sinensis; type=EST; length=802bp
TTTTTTTTTTTTTTTTTATAGAATTATTTAAAAATTAAACAGTAACAGTT
CAATACCAACATGGGAAAAAACAAGCACCATAATTCGTCGCTGCATGAAA
TGAGGATTGAAGAATGCAGATTCCTAGCATTAACACATCTTTGGCATCAT
TTCTCATTTAGATATTTCAGCACAGCTAAAAGTACACACATAAACAAAGC
CGAGAGGATGACGGTGTCACGAACTACTCTTTGGAGGATTTATTGATGAG
GGACTTGTGGATATGAGGAATAACTCCTCCACCGGCTATGGTTCCTTTAA
TGAGAGTGTCAAGTTCTTCATCTCCTCGGATAGCAAGCTGCAAATGCCTT
GGAGTAATACGTTTGACCTTCAAATCCTTGCTAGCATTCCCTGCCAACTC
CAACACTTCGGCAGTTAGATATTCCAAAATGGCTGCTGTATAAACAGCAG
CTGTTGCGCCAACCCTTCCGTGAGCAGCAGCCCTTTCCTTTAGTAGACGA
TGGACCCTTCCCACTGGGAACTGAAGACCAGCACGAGAAGAACGGGAGAC
GGGTTTCTTCTTGTCCTTATCCTTGTTGTTGTTAATGGTGGTTTTGCCTG
TTATCAGTCCTTTGGCTCCTTTGCCCGACATTTTCCCGCCTAATTGCTAC
AGCTTCTTTTAAATTAATTAATTATTTATTTAATTATTTTTAATTTTTTC
TGAGATGAAAATTATCGGAGAAGAAAGAAAGAGATAAAGCAAAGCGAGCG
TTTGAGATTTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAAGTG
AA
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