CX047646 | Citrus Genome Database

Overview


Name	CX047646
Unique Name	CX047646
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	884

Libraries


Library Name	Type
Ruby Orange Developing Seed cDNA Library UCRCS09	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_PORYE (Cytochrome b6 OS=Porphyra yezoensis GN=petB PE=3 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.798e-102
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 1

Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDI+SKYVPPHVNIFYCLGGI    FL+QVATGFAMTFYYRPTV EAF SV+YIMT+VNFGWLIRS+HRWS SMMVLM ILHVFRVYLTGGFKKPRELTWVTGV+L VLT SFGVTGYSLPWDQIGYWAVKIVTGVP+A+PV+G+ +VELLRG  SVGQ TLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDISSKYVPPHVNIFYCLGGIVFVSFLIQVATGFAMTFYYRPTVAEAFTSVEYIMTDVNFGWLIRSIHRWSVSMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILGVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPDAVPVVGASIVELLRGGVSVGQGTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215

[Close]

BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_OLTVI (Cytochrome b6 OS=Oltmannsiellopsis viridis GN=petB PE=3 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 2.348e-102
Identity = 176/202 (87.13%), Postives = 190/202 (94.06%), Query Frame = 1

Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            +QAIADD++SKYVPPHVNIFYCLGGIT T FLVQVATGFAMTFYYRPTV EAFASVQYIMT+VNFGWLIRS+HRWSASMMV+M ILHVFRVYLTGGFK+PRELTWVTGV++AV T SFGVTGYSLPWDQ+GYWAVKIVTGVP+AIPV+G+ LVELLRG   VGQ+TLTRFYSLHTFVLPL TAVFML HFLMIRKQGISGPL
Sbjct:   14 LQAIADDVSSKYVPPHVNIFYCLGGITFTSFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVMMMILHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVVGAALVELLRGGVGVGQATLTRFYSLHTFVLPLATAVFMLAHFLMIRKQGISGPL 215

[Close]

BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_CYAME (Cytochrome b6 OS=Cyanidioschyzon merolae GN=petB PE=3 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 3.067e-102
Identity = 176/202 (87.13%), Postives = 190/202 (94.06%), Query Frame = 1

Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQ IADDITSKYVPPHVNIFYCLGG+TLTCFLVQVATGFAMTFYYRPTV EAF+SV+Y+MT+VNFGWLIRS+HRWSASMMVLM ILH+FRVYLTGGFKKPRELTW+TGV+L VLT SFGVTGYSLPWDQ+GYWA KIVTGVPEAIPV+GS LVELLRG  SVGQ+TLTRFYSLHT VLP+L+ VFML HFLMIRKQGISGPL
Sbjct:   14 IQDIADDITSKYVPPHVNIFYCLGGMTLTCFLVQVATGFAMTFYYRPTVAEAFSSVEYMMTQVNFGWLIRSLHRWSASMMVLMMILHIFRVYLTGGFKKPRELTWITGVILGVLTVSFGVTGYSLPWDQVGYWACKIVTGVPEAIPVVGSSLVELLRGDVSVGQATLTRFYSLHTLVLPVLSLVFMLAHFLMIRKQGISGPL 215

[Close]

BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_CYAP4 (Cytochrome b6 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=petB PE=3 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 4.005e-102
Identity = 174/202 (86.14%), Postives = 190/202 (94.06%), Query Frame = 1

Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQA+ADD++SKYVPPHVNIFYCLGGITLTCFL+Q ATGFAMTFYY+PTVTEAFASVQYIM +VNFGWLIRS+H+WSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAV+T SFGVTGYSLPWDQ+GYWAVKIV+GVP AIPV+G  +VEL+RG  SVGQ TLTR+YSLHTFVLP L AVFML+HFLMIRKQGISGPL
Sbjct:   21 IQALADDVSSKYVPPHVNIFYCLGGITLTCFLIQFATGFAMTFYYKPTVTEAFASVQYIMNDVNFGWLIRSIHKWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPSAIPVVGDTIVELMRGGVSVGQGTLTRYYSLHTFVLPWLIAVFMLLHFLMIRKQGISGPL 222

[Close]

BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_GUITH (Cytochrome b6 OS=Guillardia theta GN=petB PE=3 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 5.231e-102
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 1

Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYC+GGIT TCF++QVATGFAMTFYYRPTV EAFASV+YIMTEVN+GWL RS+HRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGV LAV+T SFGVTGYSLPWDQ+GYWA KIVTGVPEAIPV+GS LVELLRGS SVGQ+TLTRFYS HTFVLP+  AV ML HFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCIGGITFTCFIIQVATGFAMTFYYRPTVAEAFASVEYIMTEVNYGWLFRSMHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVTLAVVTVSFGVTGYSLPWDQVGYWACKIVTGVPEAIPVVGSLLVELLRGSVSVGQATLTRFYSAHTFVLPVAAAVLMLTHFLMIRKQGISGPL 215

[Close]

BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_CYAP8 (Cytochrome b6 OS=Cyanothece sp. (strain PCC 8801) GN=petB PE=3 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 5.231e-102
Identity = 175/202 (86.63%), Postives = 189/202 (93.56%), Query Frame = 1

Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAI+DDITSKYVPPHVNIFYCLGGITL CF++Q ATGFAMTFYY+PTVT+AFASVQYIM EVNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFKKPRELTW+TGV+LAV+T SFGVTGYSLPWDQ+GYWAVKIV+GVP AIPV+G  +VELLRG  SVGQ+TLTRFYSLHTFV P L AVFMLMHFLMIRKQGISGPL
Sbjct:   21 IQAISDDITSKYVPPHVNIFYCLGGITLVCFIIQFATGFAMTFYYKPTVTDAFASVQYIMNEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWMTGVILAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDQMVELLRGGQSVGQATLTRFYSLHTFVFPWLIAVFMLMHFLMIRKQGISGPL 222

[Close]

BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_CYAA5 (Cytochrome b6 OS=Cyanothece sp. (strain ATCC 51142) GN=petB PE=3 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 1.165e-101
Identity = 176/202 (87.13%), Postives = 188/202 (93.07%), Query Frame = 1

Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAI+DDITSKYVPPHVNIFYCLGGITL CFLVQ ATGFAMTFYY+PTVTEAF+SVQYIM EVNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFKKPRELTW+TGV+LAV+T SFGVTGYSLPWDQ+GYWAVKIV+GVP AIPV+G  +VELLRG  SVGQ+TLTRFYSLHTFV P L AVFML HFLMIRKQGISGPL
Sbjct:   21 IQAISDDITSKYVPPHVNIFYCLGGITLVCFLVQFATGFAMTFYYKPTVTEAFSSVQYIMNEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWMTGVILAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDQMVELLRGGQSVGQATLTRFYSLHTFVFPWLIAVFMLAHFLMIRKQGISGPL 222

[Close]

BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_CYAP7 (Cytochrome b6 OS=Cyanothece sp. (strain PCC 7424) GN=petB PE=3 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.988e-101
Identity = 173/202 (85.64%), Postives = 188/202 (93.07%), Query Frame = 1

Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            +Q IADDITSKYVPPHVNIFYCLGGITL CFL+Q ATGFAMTFYY+PTVTEAF SV+YIM EVNFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTW+ GV++AV+T SFGVTGYSLPWDQ+GYWAVKIV+GVP AIPV+G  +VELLRG ASVGQ+TLTRFYS+HTFVLP L AVFML+HFLMIRKQGISGPL
Sbjct:   21 VQEIADDITSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVTEAFTSVEYIMNEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWIVGVIMAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPAAIPVVGDQMVELLRGGASVGQTTLTRFYSIHTFVLPWLMAVFMLLHFLMIRKQGISGPL 222

[Close]

BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_TRIEI (Cytochrome b6 OS=Trichodesmium erythraeum (strain IMS101) GN=petB PE=3 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 3.391e-101
Identity = 174/202 (86.14%), Postives = 189/202 (93.56%), Query Frame = 1

Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            +QA+ADDI+SKYVPPHVNIFYCLGGITL CFL+Q ATGFAMTFYY+PTVTEA ASVQYIMTEVNFGWLIRS+HRWSASMMVLM ILH FRVYLTGGFKKPRELTWVTGVV+AV+T SFGVTGYSLPWDQIGYWAVKIV+GVP+AIP +G  +VEL+RGS SVGQ+TLTRFYSLHTFVLP   AVFML+HFLMIRKQGISGPL
Sbjct:   21 VQALADDISSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVTEALASVQYIMTEVNFGWLIRSIHRWSASMMVLMMILHTFRVYLTGGFKKPRELTWVTGVVMAVITVSFGVTGYSLPWDQIGYWAVKIVSGVPDAIPFVGPFIVELMRGSTSVGQATLTRFYSLHTFVLPWFIAVFMLLHFLMIRKQGISGPL 222

[Close]

BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_SYNP6 (Cytochrome b6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petB PE=3 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 3.391e-101
Identity = 172/202 (85.15%), Postives = 192/202 (95.05%), Query Frame = 1

Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIA+D++SKYVPPHVNIFYCLGGITLTCFL+Q ATGFAMTFYY+PTV EA++SVQ+IM +VNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFK+PRELTWVTGVV+AV+T +FGVTGYSLPWDQ+GYWAVKIV+GVPEAIPV+GS +VELLRG  SVGQ+TLTRFYSLHTFVLP L AVFML+HFLMIRKQGISGPL
Sbjct:   14 IQAIAEDVSSKYVPPHVNIFYCLGGITLTCFLIQFATGFAMTFYYKPTVAEAYSSVQFIMNQVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKRPRELTWVTGVVMAVITVTFGVTGYSLPWDQVGYWAVKIVSGVPEAIPVVGSAMVELLRGGQSVGQATLTRFYSLHTFVLPWLIAVFMLLHFLMIRKQGISGPL 215

The following BLAST results are available for this feature:

BLAST of CX047646 vs. ExPASy Swiss-Prot

BLAST of CX047646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CYB6_PORYE	1.798e-102	87.62	Cytochrome b6 OS=Porphyra yezoensis GN=petB PE=3 S...	[more]
CYB6_OLTVI	2.348e-102	87.13	Cytochrome b6 OS=Oltmannsiellopsis viridis GN=petB...	[more]
CYB6_CYAME	3.067e-102	87.13	Cytochrome b6 OS=Cyanidioschyzon merolae GN=petB P...	[more]
CYB6_CYAP4	4.005e-102	86.14	Cytochrome b6 OS=Cyanothece sp. (strain PCC 7425 /...	[more]
CYB6_GUITH	5.231e-102	87.62	Cytochrome b6 OS=Guillardia theta GN=petB PE=3 SV=...	[more]
CYB6_CYAP8	5.231e-102	86.63	Cytochrome b6 OS=Cyanothece sp. (strain PCC 8801) ...	[more]
CYB6_CYAA5	1.165e-101	87.13	Cytochrome b6 OS=Cyanothece sp. (strain ATCC 51142...	[more]
CYB6_CYAP7	1.988e-101	85.64	Cytochrome b6 OS=Cyanothece sp. (strain PCC 7424) ...	[more]
CYB6_TRIEI	3.391e-101	86.14	Cytochrome b6 OS=Trichodesmium erythraeum (strain ...	[more]
CYB6_SYNP6	3.391e-101	85.15	Cytochrome b6 OS=Synechococcus sp. (strain ATCC 27...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS09_15F03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15F03-L6-1-5.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX047646 ID=CX047646; Name=CX047646; organism=Citrus sinensis; type=EST; length=884bp
ATTCAGGCGATTGCAGATGATATAACTAGTAAATACGTTCCTCCTCATGT
CAACATATTTTATTGTCTGGGAGGAATTACGCTCACTTGTTTTTTAGTAC
AAGTAGCTACAGGGTTTGCTATGACTTTTTACTACCGCCCGACCGTTACT
GAGGCTTTTGCCTCTGTTCAATACATAATGACGGAAGTTAACTTCGGGTG
GTTAATTCGATCGGTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGA
CAATCCTGCACGTATTTCGCGTGTATCTCACCGGGGGTTTTAAAAAACCT
CGCGAATTGACTTGGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATC
TTTTGGTGTAACAGGTTATTCTTTACCTTGGGACCAAATTGGATATTGGG
CAGTAAAAATTGTAACAGGCGTGCCCGAAGCAATTCCGGTAATAGGATCG
CCTTTGGTAGAGTTATTACGCGGAAGTGCTAGTGTGGGACAGTCCACTTT
GACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCG
TATTTATGTTAATGCATTTCCTAATGATACGTAAACAAGGTATTTCTGGC
CCTTTATAAAATTATACAAAATCTAGATTATAGCGATTTGTAATCAACCC
TTTATCTTATTGCTTGGGGGAGGAACAATAATATTTCATTGCTACAAATA
TGGATTATTGACAAAGAATAAGACATGGAGTTGGAAATTTCCCCTCAACT
CCATAATATTGGACTTTTTATTTGACATGAATGAAATGAATAGTTGACGG
GAATTCTCCGAAGAGAAAATGGATTATGGGAGTGTGTGACTTGAACTATT
GATTGGGCCGTGCAGAAATATGTCTTTAATCTGC