CX047632

Overview
NameCX047632
Unique NameCX047632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047632 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.050e-25
Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = 1
Query:    1 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 540
            EIAA+FA   HET           +A  YC   Q  P + +            +Y+GRGP+QL+WN NY+  G+ L  D LN+PD++  DP++SFK+++WFW+     +     VI+D   P+          G+G T  IINGG EC       +  R+G++  +C + G+ PG+NL C
Sbjct:   99 EIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNK-----------EYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of CX047632 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.795e-24
Identity = 62/183 (33.88%), Postives = 96/183 (52.46%), Query Frame = 1
Query:    1 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 540
            EIA  FA   HET               +CYI +++ AS D            PG+ Y+GRGPIQL+WN NY  CG++L ++LL  P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC    + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  121 EIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CX047632 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.470e-22
Identity = 60/182 (32.97%), Postives = 89/182 (48.90%), Query Frame = 1
Query:    1 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 540
            EIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG      +  R+G++  +C + G+ PG NL C
Sbjct:  122 EIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CX047632 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.528e-22
Identity = 62/184 (33.70%), Postives = 86/184 (46.74%), Query Frame = 1
Query:    1 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 540
            EIAA FA   HET               +CYI ++  AS D          P      Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +C + G+  GDNL C
Sbjct:  121 EIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CX047632 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.729e-21
Identity = 57/182 (31.32%), Postives = 88/182 (48.35%), Query Frame = 1
Query:    1 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 540
            EIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC       +  R+G++  +C +  + PG NL C
Sbjct:  133 EIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CX047632 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  307 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 444
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CX047632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_DIOJA7.050e-2535.00Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_BRANA7.795e-2433.88Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_MAIZE1.470e-2232.97Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU9.528e-2233.70Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIA_MAIZE4.729e-2131.32Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ARAHY1.991e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_15E04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15E04-J8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047632 ID=CX047632; Name=CX047632; organism=Citrus sinensis; type=EST; length=767bp
GAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATG
GACCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCTATATTAGGC
AAGTTAGCCCTGCGTCGTCCGACTACTGTTATCCTTACTGTCCATGTCCC
TTGCCAGGGCAATACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTG
CAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATC
CAGACCTACTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGG
TTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTAT
CGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGG
GATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCTAC
GTTGGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTACCACTTTCTG
TGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAACCAAC
GGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATCATGATCA
ACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGA
TGTCACACTTGTAGGTGGACAACTAAATTGTTAGTTTGTTACGCTCTTAT
TGTAAGTAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCTC
CAAAAAAAAAAAAAAAA
back to top