CX047624

Overview
NameCX047624
Unique NameCX047624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHSY_ANTMA (Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.188e-41
Identity = 80/100 (80.00%), Postives = 86/100 (86.00%), Query Frame = -3
Query:  191 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 490
            LGISDWNS+FWIAHPGGPAILDQVE          ++TRQVLSEYGNMSSACVLFILDEMRK S +E  +TTGEGLDWGVLFGFGPGLTVETVVLHSVP+
Sbjct:  290 LGISDWNSVFWIAHPGGPAILDQVEEKLGLKPEKLRSTRQVLSEYGNMSSACVLFILDEMRKSSAKEGMSTTGEGLDWGVLFGFGPGLTVETVVLHSVPL 389          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 3.732e-41
Identity = 80/100 (80.00%), Postives = 86/100 (86.00%), Query Frame = -3
Query:  191 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 490
            LGISDWNS+FWIAHPGGPAILDQVES         +ATR VLSEYGNMSSACVLFILDEMR+ S+E  K TTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  290 LGISDWNSLFWIAHPGGPAILDQVESKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRRNSLEGGKVTTGEGLEWGVLFGFGPGLTVETVVLHSVPV 389          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHS1_SINAL (Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.732e-41
Identity = 80/100 (80.00%), Postives = 86/100 (86.00%), Query Frame = -3
Query:  191 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 490
            LGISDWNS+FWIAHPGGPAILD VE          +ATR VLSEYGNMSSACVLFILDEMR+KSVE+  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  296 LGISDWNSLFWIAHPGGPAILDDVEKKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRRKSVEDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPV 395          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.874e-41
Identity = 80/100 (80.00%), Postives = 88/100 (88.00%), Query Frame = -3
Query:  191 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 490
            LGI+D+NSIFW+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  294 LGITDYNSIFWVAHPGGPAILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: THS1_VITVI (Stilbene synthase 1 OS=Vitis vinifera GN=VINST1 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 6.365e-41
Identity = 80/99 (80.81%), Postives = 86/99 (86.87%), Query Frame = -3
Query:  194 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 490
            LGISDWNS+FWIAHPGGPAILD VE+         +ATR VLSEYGNMSSACVLFILDEMRKKS++  KATTGEGLDWGVLFGFGPGLT+ETVVLHSVP
Sbjct:  290 LGISDWNSLFWIAHPGGPAILDAVEAKLNLEKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGEKATTGEGLDWGVLFGFGPGLTIETVVLHSVP 388          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHSY_CALCH (Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 6.365e-41
Identity = 80/99 (80.81%), Postives = 85/99 (85.86%), Query Frame = -3
Query:  194 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 490
            LGI+DWNSIFWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFI+DEMRKKS E+  ATTGEGLDWGVLFGFGPGLTVETVVLHS+P
Sbjct:  293 LGITDWNSIFWIAHPGGPAILDQVELKLGLKEEKMRATRHVLSEYGNMSSACVLFIIDEMRKKSAEDGAATTGEGLDWGVLFGFGPGLTVETVVLHSLP 391          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHSY_ARAAL (Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.365e-41
Identity = 80/100 (80.00%), Postives = 86/100 (86.00%), Query Frame = -3
Query:  191 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 490
            LGISDWNS+FWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKKS ++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  292 LGISDWNSLFWIAHPGGPAILDQVEIKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRKKSAKDGAATTGEGLEWGVLFGFGPGLTVETVVLHSVPL 391          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHS7_SORBI (Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.365e-41
Identity = 80/100 (80.00%), Postives = 87/100 (87.00%), Query Frame = -3
Query:  191 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 490
            LGI+D+NSIFW+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S EE +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  294 LGITDYNSIFWVAHPGGPAILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEEGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: CHSY_VITVI (Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.086e-40
Identity = 80/102 (78.43%), Postives = 86/102 (84.31%), Query Frame = -3
Query:  185 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 490
            +GISDWNS+FWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKKS+EE K +TGEGL+WGVLFGFGPGLTVETVVLHSV   A
Sbjct:  290 IGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKSIEEGKGSTGEGLEWGVLFGFGPGLTVETVVLHSVSAPA 391          
BLAST of CX047624 vs. ExPASy Swiss-Prot
Match: THS2_VITVI (Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT00004047001 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.418e-40
Identity = 78/100 (78.00%), Postives = 87/100 (87.00%), Query Frame = -3
Query:  191 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 490
            LGISDWNS+FWIAHPGGPAILD VE+         +ATR VLSEYGNMSSACVLFILDEMRKKS++  +ATTGEGLDWGVLFGFGPGLT+ETVVLHS+P+
Sbjct:  290 LGISDWNSLFWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGERATTGEGLDWGVLFGFGPGLTIETVVLHSIPM 389          
The following BLAST results are available for this feature:
BLAST of CX047624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHSY_ANTMA2.188e-4180.00Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3... [more]
CHSY_BETVE3.732e-4180.00Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHS1_SINAL3.732e-4180.00Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 S... [more]
CHS4_SORBI4.874e-4180.00Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]
THS1_VITVI6.365e-4180.81Stilbene synthase 1 OS=Vitis vinifera GN=VINST1 PE... [more]
CHSY_CALCH6.365e-4180.81Chalcone synthase OS=Callistephus chinensis GN=CHS... [more]
CHSY_ARAAL6.365e-4180.00Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=... [more]
CHS7_SORBI6.365e-4180.00Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=... [more]
CHSY_VITVI1.086e-4078.43Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV... [more]
THS2_VITVI1.418e-4078.00Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT000... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15D11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15D11-H22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047624 ID=CX047624; Name=CX047624; organism=Citrus sinensis; type=EST; length=495bp
CAAGAATTTATGCATAAACACAAAGCGTTGCCCAGGTTTGGTGACGTCAT
AAGAGAAAAGGCACGATGCCTTAAACTCAATTGACAAAACTAAACCTTCA
CACGATCAACCAATAACTCAACTGTGAAAGCATACAACATAAAGTTACTG
AACTACTAAACATACTGATGGAGTTCTCACTTCAAGCTTTGATGGGGACA
CTGTGCAGCACAACGGTCTCGACGGTGAGCCCCGGCCCGAACCCGAACAG
CACACCCCAATCAAGCCCTTCGCCGGTGGTGGCTTTCGCTTCCTCAACAG
ACTTCTTTCTCATCTCGTCAAGGATGAACAAGACACAAGCGCTTGACATG
TTACCGTACTCACTCAACACTTGACGTGTGGCCTTCAGCTTCTCCCCTTT
GAGGCCCAGTTTAGACTCCACTTGGTCCAGAATTGCGGGCCCACCGGGGT
GAGCGATCCAGAATATCGAGTTCCAGTCGCTGATGCCAAGCGCCT
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