CX047623

Overview
NameCX047623
Unique NameCX047623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS5_MEDSA (Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.904e-38
Identity = 77/100 (77.00%), Postives = 83/100 (83.00%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 302
            LGISD+NSIFWIAHPGGPAILDQVE           ATR+VLSEYGNMSSACVLFILDEMRKKS ++   TTGEGL+WGVLFGFGPGLT+ETVVL SV I
Sbjct:  290 LGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQDGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS4_MEDSA (Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.904e-38
Identity = 77/100 (77.00%), Postives = 83/100 (83.00%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 302
            LGISD+NSIFWIAHPGGPAILDQVE           ATR+VLSEYGNMSSACVLFILDEMRKKS ++   TTGEGL+WGVLFGFGPGLT+ETVVL SV I
Sbjct:  290 LGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMRATREVLSEYGNMSSACVLFILDEMRKKSTQDGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS2_TRISU (Chalcone synthase 2 OS=Trifolium subterraneum GN=CHS2 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.904e-38
Identity = 77/100 (77.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 302
            L ISD+NSIFWIAHPGGPAILDQVE           ATR+VLSEYGNMSSACVLFILDEMRKKS +    TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  290 LNISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQNGLKTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS1_TRISU (Chalcone synthase 1 OS=Trifolium subterraneum GN=CHS1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.904e-38
Identity = 77/100 (77.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 302
            L ISD+NSIFWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRKKS ++   TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  290 LNISDYNSIFWIAHPGGPAILDQVEQKLSLKPEKMKATRDVLSEYGNMSSACVLFILDEMRKKSAQDGLKTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHSE_IPOPU (Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.793e-38
Identity = 77/98 (78.57%), Postives = 80/98 (81.63%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 296
            LGI DWNS+FWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRK S +E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  290 LGIRDWNSLFWIAHPGGPAILDQVEEKLELKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSKEGLNTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHSE_IPONI (Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.793e-38
Identity = 77/98 (78.57%), Postives = 80/98 (81.63%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 296
            LGI DWNS+FWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRK S +E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  290 LGIHDWNSLFWIAHPGGPAILDQVEEKLELKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSKEGLNTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS7_SOYBN (Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.793e-38
Identity = 77/100 (77.00%), Postives = 81/100 (81.00%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 302
            L ISD+NSIFWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMR+KS E    TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  290 LNISDYNSIFWIAHPGGPAILDQVEQKLGLKPEKMKATRDVLSEYGNMSSACVLFILDEMRRKSAENGHKTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS2_PEA (Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.793e-38
Identity = 77/100 (77.00%), Postives = 83/100 (83.00%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 302
            LGISD+NSIFWIAHPGGPAILDQVE           ATR+VLSEYGNMSSACVLFILDEMRKKS ++   TTGEGL+WGVLFGFGPGLT+ETVVL SV I
Sbjct:  290 LGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMRATREVLSEYGNMSSACVLFILDEMRKKSTQDGLNTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHSY_HYDMC (Chalcone synthase OS=Hydrangea macrophylla GN=CHS PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.953e-38
Identity = 76/98 (77.55%), Postives = 79/98 (80.61%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 296
            L ISDWNSIFWIAHPGGPAILDQVE           ATR VLS+YGNMSSACVLFI+DEMRK S EE   TTGEGL+WGVLFGFGPGLTVETVVLH V
Sbjct:  290 LDISDWNSIFWIAHPGGPAILDQVEKKLALKPEKLRATRNVLSDYGNMSSACVLFIMDEMRKNSAEEGLMTTGEGLEWGVLFGFGPGLTVETVVLHGV 387          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHS2_MEDSA (Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.953e-38
Identity = 77/100 (77.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query:    3 LGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 302
            LGISD+NSIFWIAHPGGPAILDQVE           ATR+VLSEYGNMSSACVLFILDEMRKKS +    TTGEGL+WGVLFGFGPGLT+ETVVL SV I
Sbjct:  290 LGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389          
The following BLAST results are available for this feature:
BLAST of CX047623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHS5_MEDSA2.904e-3877.00Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2... [more]
CHS4_MEDSA2.904e-3877.00Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=... [more]
CHS2_TRISU2.904e-3877.00Chalcone synthase 2 OS=Trifolium subterraneum GN=C... [more]
CHS1_TRISU2.904e-3877.00Chalcone synthase 1 OS=Trifolium subterraneum GN=C... [more]
CHSE_IPOPU3.793e-3878.57Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE... [more]
CHSE_IPONI3.793e-3878.57Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV... [more]
CHS7_SOYBN3.793e-3877.00Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV... [more]
CHS2_PEA3.793e-3877.00Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 ... [more]
CHSY_HYDMC4.953e-3877.55Chalcone synthase OS=Hydrangea macrophylla GN=CHS ... [more]
CHS2_MEDSA4.953e-3877.00Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15D11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15D11-H22-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047623 ID=CX047623; Name=CX047623; organism=Citrus sinensis; type=EST; length=491bp
CGCTTGGCATCAGCGACTGGAACTCGATATTCTGGATCGCTCACCCCGGT
GGGCCCGCAATTCTGGACCAAGTGGAGTCTAAACTGGGCCTCAAAGGGGA
GAAGCTGAAGGCCACACGTCAAGTGTTGAGTGAGTACGGTAACATGTCAA
GCGCTTGTGTCTTGTTCATCCTTGACGAGATGAGAAAGAAGTCTGTTGAG
GAAGCGAAAGCCACCACCGGCGAAGGGCTTGATTGGGGTGTGCTGTTCGG
GTTCGGGCCGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTGTCCCCA
TCAAAGCTTGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCAGTAACT
TTATGTTGTATGCTTTCACAGTTGAGTTATTGGTTGATCGTGTGAAGGTT
TAGTTTTGTCAATTGAGTTTAAGGCATCGTGCCTTTTCTCTTATGACGTC
ACCAAACCTGGGCAACGCTTTGTGTTTATGCATAAATTCTT
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