CX047616
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_BOVIN (Fatty acid desaturase 2 OS=Bos taurus GN=FADS2 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12 Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = -2 Query: 364 LNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEA 618 +NH + P + DWF Q + T ++ S + DWF G L FQ+EHHLFP +PR L KI P+VR C K + Y+ A Sbjct: 340 MNHIVMEIDREPYR--DWFSSQLAATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVRSLCAKHGIEYQEKPLLRA 422
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS1_RAT (Fatty acid desaturase 1 OS=Rattus norvegicus GN=Fads1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.039e-11 Identity = 44/139 (31.65%), Postives = 69/139 (49.64%), Query Frame = -2 Query: 346 VFWTWFPLL-------VSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRS---LSFFEANVWTLR 732 VF+T+ PLL + ++ + E FV VT + HI ++H + DW Q T ++ S++ +WF G L FQ+EHHLFP +PR K+ P+V+ C K + Y S L+ F V++L+ Sbjct: 309 VFFTYMPLLGLKGLLCLFFIVRFLESNWFVW----VTQMNHIPMHIDH---------DRNVDWVSTQLQATCNVHQSAFNNWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKYGIKYESKPLLTAFADIVYSLK 434
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS1_HUMAN (Fatty acid desaturase 1 OS=Homo sapiens GN=FADS1 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.039e-11 Identity = 42/138 (30.43%), Postives = 65/138 (47.10%), Query Frame = -2 Query: 337 FWTWFPLL-------VSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 729 F T+ PLL + ++ + E FV VT + HI ++H + DW Q T ++ S++ DWF G L FQ+EHHLFP +PR K+ P+V+ C K + Y+S A + +L+ Sbjct: 307 FLTYVPLLGLKAFLGLFFIVRFLESNWFVW----VTQMNHIPMHIDH---------DRNMDWVSTQLQATCNVHKSAFNDWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIIHSLK 431
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS1_PAPAN (Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.663e-11 Identity = 34/104 (32.69%), Postives = 52/104 (50.00%), Query Frame = -2 Query: 337 VTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 648 VT + HI ++H + DW Q T ++ S++ DWF G L FQ+EHHLFP +PR K+ P+V+ C K + Y+S A + +L+ Sbjct: 337 VTQMNHIPMHIDH---------DRNMDWVSTQLQATCNVHKSAFNDWFSGHLNFQIEHHLFPMMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIIHSLK 431
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS1_MOUSE (Fatty acid desaturase 1 OS=Mus musculus GN=Fads1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.663e-11 Identity = 43/139 (30.94%), Postives = 69/139 (49.64%), Query Frame = -2 Query: 346 VFWTWFPLL-------VSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRS---LSFFEANVWTLR 732 +F+T+ PLL + ++ + E FV VT + HI ++H + DW Q T ++ S++ +WF G L FQ+EHHLFP +PR K+ P+V+ C K + Y S L+ F V++L+ Sbjct: 309 IFFTYMPLLGLKGFLGLFFIVRFLESNWFVW----VTQMNHIPMHIDH---------DRNVDWVSTQLQATCNVHQSAFNNWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKYGIKYESKPLLTAFADIVYSLK 434 The following BLAST results are available for this feature:
BLAST of CX047616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047616 ID=CX047616; Name=CX047616; organism=Citrus sinensis; type=EST; length=781bpback to top |