CX047616

Overview
NameCX047616
Unique NameCX047616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS2_BOVIN (Fatty acid desaturase 2 OS=Bos taurus GN=FADS2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12
Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = -2
Query:  364 LNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEA 618
            +NH    +   P +  DWF  Q + T ++  S + DWF G L FQ+EHHLFP +PR  L KI P+VR  C K  + Y+      A
Sbjct:  340 MNHIVMEIDREPYR--DWFSSQLAATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVRSLCAKHGIEYQEKPLLRA 422          
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS1_RAT (Fatty acid desaturase 1 OS=Rattus norvegicus GN=Fads1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.039e-11
Identity = 44/139 (31.65%), Postives = 69/139 (49.64%), Query Frame = -2
Query:  346 VFWTWFPLL-------VSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRS---LSFFEANVWTLR 732
            VF+T+ PLL       + ++  + E   FV     VT + HI   ++H          +  DW   Q   T ++  S++ +WF G L FQ+EHHLFP +PR    K+ P+V+  C K  + Y S   L+ F   V++L+
Sbjct:  309 VFFTYMPLLGLKGLLCLFFIVRFLESNWFVW----VTQMNHIPMHIDH---------DRNVDWVSTQLQATCNVHQSAFNNWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKYGIKYESKPLLTAFADIVYSLK 434          
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS1_HUMAN (Fatty acid desaturase 1 OS=Homo sapiens GN=FADS1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.039e-11
Identity = 42/138 (30.43%), Postives = 65/138 (47.10%), Query Frame = -2
Query:  337 FWTWFPLL-------VSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 729
            F T+ PLL       + ++  + E   FV     VT + HI   ++H          +  DW   Q   T ++  S++ DWF G L FQ+EHHLFP +PR    K+ P+V+  C K  + Y+S     A    + +L+
Sbjct:  307 FLTYVPLLGLKAFLGLFFIVRFLESNWFVW----VTQMNHIPMHIDH---------DRNMDWVSTQLQATCNVHKSAFNDWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIIHSLK 431          
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS1_PAPAN (Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.663e-11
Identity = 34/104 (32.69%), Postives = 52/104 (50.00%), Query Frame = -2
Query:  337 VTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRSLSFFEANVWTLRTLR 648
            VT + HI   ++H          +  DW   Q   T ++  S++ DWF G L FQ+EHHLFP +PR    K+ P+V+  C K  + Y+S     A    + +L+
Sbjct:  337 VTQMNHIPMHIDH---------DRNMDWVSTQLQATCNVHKSAFNDWFSGHLNFQIEHHLFPMMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIIHSLK 431          
BLAST of CX047616 vs. ExPASy Swiss-Prot
Match: FADS1_MOUSE (Fatty acid desaturase 1 OS=Mus musculus GN=Fads1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.663e-11
Identity = 43/139 (30.94%), Postives = 69/139 (49.64%), Query Frame = -2
Query:  346 VFWTWFPLL-------VSYLPNWPERVMFVMASFTVTAIQHIQFCLNHFAANVYFGPPKGNDWFEKQTSGTLDIACSSWMDWFHGGLQFQLEHHLFPRLPRCQLRKILPVVRDFCKKPNMPYRS---LSFFEANVWTLR 732
            +F+T+ PLL       + ++  + E   FV     VT + HI   ++H          +  DW   Q   T ++  S++ +WF G L FQ+EHHLFP +PR    K+ P+V+  C K  + Y S   L+ F   V++L+
Sbjct:  309 IFFTYMPLLGLKGFLGLFFIVRFLESNWFVW----VTQMNHIPMHIDH---------DRNVDWVSTQLQATCNVHQSAFNNWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKYGIKYESKPLLTAFADIVYSLK 434          
The following BLAST results are available for this feature:
BLAST of CX047616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
FADS2_BOVIN3.146e-1240.00Fatty acid desaturase 2 OS=Bos taurus GN=FADS2 PE=... [more]
FADS1_RAT2.039e-1131.65Fatty acid desaturase 1 OS=Rattus norvegicus GN=Fa... [more]
FADS1_HUMAN2.039e-1130.43Fatty acid desaturase 1 OS=Homo sapiens GN=FADS1 P... [more]
FADS1_PAPAN2.663e-1132.69Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 P... [more]
FADS1_MOUSE2.663e-1130.94Fatty acid desaturase 1 OS=Mus musculus GN=Fads1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15C12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15C12-F24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047616 ID=CX047616; Name=CX047616; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTTAAAAAAAAAAAAAAAGGCTTAATTGAATCCCCG
AGTCATTATCTGATTACAACTGGGAATAAAAAAATATTGCTAAAAAGAGC
ATTTATTCATCATCCTATACAAATGACGACCCCAAGCCAAGAGGCCAAAT
CAAGAGCCAAAAAAATATTCGTTGGGGGCAAAATAACTTGGGGCTATAAA
ATCTCGATAGGCATCTGTTAATGTATTTTATATATTAAAAAAAAAAAAAC
ACAACTCACCCATGAGTATTAAAAGCTTCCCAAAGCAAATTCTTGGGGAC
AGGGTTTGGGAGGTCCCGAGCTTGCAAAACAACCCCCCTCAAAGTCCTAA
GGGTCCACACATTGGCCTCAAAAAAGGACAAACTTCTGTAAGGCATATTG
GGCTTCTTGCAAAAATCCCTCACCACCGGCAAAATCTTCCTCAATTGGCA
CCTTGGCAACCTTGGAAACAAATGATGCTCTAGCTGAAACTGCAACCCAC
CATGAAACCAATCCATCCAAGATGAGCAAGCAATATCCAATGTCCCACTT
GTTTGCTTCTCAAACCAGTCATTCCCTTTAGGCGGACCAAAATACACGTT
TGCAGCAAAGTGGTTTAAACAAAACTGAATGTGTTGGATGGCCGTGACAG
TAAAACTTGCCATCACAAACATCACCCTTTCAGGCCAGTTTGGTAGATAT
GAAACTAGAAGTGGGAACCAAGTCCAAAAGACAAGAGTACCCATGATGTT
CAAGGCTCTATCTGGGACCTTACGCTTTGAA
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