CX047602

Overview
NameCX047602
Unique NameCX047602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047602 vs. ExPASy Swiss-Prot
Match: E4PD_SALPK (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=epd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   56 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNENEYKPE 481
            V+I INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ ++  LF G+  + +   R   ++PW E G + V++ TGV+                V+ S P S D    VV GVN+N+ + E
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVYGNQEHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAE 146          
BLAST of CX047602 vs. ExPASy Swiss-Prot
Match: E4PD_SALPC (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=epd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   56 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNENEYKPE 481
            V+I INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ ++  LF G+  + +   R   ++PW E G + V++ TGV+                V+ S P S D    VV GVN+N+ + E
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVYGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAE 146          
BLAST of CX047602 vs. ExPASy Swiss-Prot
Match: E4PD_SALPB (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=epd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   56 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNENEYKPE 481
            V+I INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ ++  LF G+  + +   R   ++PW E G + V++ TGV+                V+ S P S D    VV GVN+N+ + E
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVYGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAE 146          
BLAST of CX047602 vs. ExPASy Swiss-Prot
Match: E4PD_SALPA (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A GN=epd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   56 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNENEYKPE 481
            V+I INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ ++  LF G+  + +   R   ++PW E G + V++ TGV+                V+ S P S D    VV GVN+N+ + E
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVYGNQEHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAE 146          
BLAST of CX047602 vs. ExPASy Swiss-Prot
Match: E4PD_SALNS (D-erythrose-4-phosphate dehydrogenase OS=Salmonella newport (strain SL254) GN=epd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   56 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNENEYKPE 481
            V+I INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ ++  LF G+  + +   R   ++PW E G + V++ TGV+                V+ S P S D    VV GVN+N+ + E
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVYGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAE 146          
BLAST of CX047602 vs. ExPASy Swiss-Prot
Match: E4PD_SALHS (D-erythrose-4-phosphate dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=epd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   56 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNENEYKPE 481
            V+I INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ ++  LF G+  + +   R   ++PW E G + V++ TGV+                V+ S P S D    VV GVN+N+ + E
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVYGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAE 146          
BLAST of CX047602 vs. ExPASy Swiss-Prot
Match: E4PD_SALCH (D-erythrose-4-phosphate dehydrogenase OS=Salmonella choleraesuis GN=epd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   56 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNENEYKPE 481
            V+I INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ ++  LF G+  + +   R   ++PW E G + V++ TGV+                V+ S P S D    VV GVN+N+ + E
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVYGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAE 146          
BLAST of CX047602 vs. ExPASy Swiss-Prot
Match: E4PD_SALA4 (D-erythrose-4-phosphate dehydrogenase OS=Salmonella agona (strain SL483) GN=epd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   56 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNENEYKPE 481
            V+I INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ ++  LF G+  + +   R   ++PW E G + V++ TGV+                V+ S P S D    VV GVN+N+ + E
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVYGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAE 146          
BLAST of CX047602 vs. ExPASy Swiss-Prot
Match: E4PD_ECOUT (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=epd PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 46/147 (31.29%), Postives = 76/147 (51.70%), Query Frame = 2
Query:   56 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNENEYKPE 481
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     + +D   L  G+  + V   R+ + +PW E G + V++ TGV+                V+ S P S D    VV GVN+++ + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDTTVVYGVNQDQLRAE 146          
BLAST of CX047602 vs. ExPASy Swiss-Prot
Match: E4PD_ECOSM (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=epd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 46/147 (31.29%), Postives = 76/147 (51.70%), Query Frame = 2
Query:   56 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNENEYKPE 481
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     + +D   L  G+  + V   R+ + +PW E G + V++ TGV+                V+ S P S D    VV GVN+++ + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
The following BLAST results are available for this feature:
BLAST of CX047602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
E4PD_SALPK3.445e-1232.43D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPC3.445e-1232.43D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPB3.445e-1232.43D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPA3.445e-1232.43D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALNS3.445e-1232.43D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALHS3.445e-1232.43D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALCH3.445e-1232.43D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALA43.445e-1232.43D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_ECOUT3.445e-1231.29D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOSM3.445e-1231.29D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15B12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15B12-D24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047602 ID=CX047602; Name=CX047602; organism=Citrus sinensis; type=EST; length=484bp
CTTTCTTCACCACTCTTTCACCGCTCAATTTCATCTCTCGAGAATCATGG
GGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTGGTAGGCTGGTG
GCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTTGCTGTTAATGA
TCCCTTTATCACAACCGATTACATGACATACATGTTTAAGTACGACAGTG
TTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGGACGATAAGACC
CTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCAGA
GGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGTCGACTG
GAGTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTGCT
AAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGTTGT
CGGTGTCAATGAAAACGAGTACAAACCAGAGCTC
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