CX047557

Overview
NameCX047557
Unique NameCX047557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: DHI2_RAT (Corticosteroid 11-beta-dehydrogenase isozyme 2 OS=Rattus norvegicus GN=Hsd11b2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 55/191 (28.80%), Postives = 98/191 (51.31%), Query Frame = 1
Query:  133 VSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGR--LDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPHLRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVE-LGSDVGVTIVTPGFIESE 696
            V+ + V+ITG  +G G+  A +                    +   AR   SP +  ++ D++K +D   ++E T  H     L  LVNNAG++ V    ++  +  F++ M +NF+G++  T+  +P LR+++G+IV + S A  +  P ++ Y  SKAA+ L  +T   E L   + V+I+ PG  ++E
Sbjct:   80 VATRAVLITGCDTGFGKETAKKLDAMGFTVLATVLDLNGPGALELRAR--CSPRLKLLQMDLTKPEDISRVLEITKAHTASTGLWGLVNNAGLNMVVADVELSPVVTFRECMEVNFFGALELTKGLLPLLRHSRGRIVTVGSPAGDMPYPCLAAYGTSKAAIALLMDTFSCELLPWGIKVSIIQPGCFKTE 268          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: FABG_BACSU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Bacillus subtilis GN=fabG PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 59/220 (26.82%), Postives = 109/220 (49.55%), Query Frame = 1
Query:  133 VSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXX-EKSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPH-LRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELGS-DVGVTIVTPGFIESELTQGKFLTGEGRIQIDENLRDAQVSTIPV 783
            ++ K  I+TGAS GIG  +A +               E    EV D  + +G    I ++ADVS  +D +++++ET++ F  +D LVNNAGI+   L   +    ++  ++NIN  G    T+      ++   G+I+ +SS       P  + Y A+KA ++   ++   EL S ++ V  + PGFI +++T           ++ ++++D  +  IP+
Sbjct:    2 LNDKTAIVTGASRGIGRSIALDLAKSGANVVVNYSGNEAKANEVVDEIKSMGRK-AIAVKADVSNPEDVQNMIKETLSVFSTIDILVNNAGITRDNLIMRMKE-DEWDDVININLKGVFNCTKAVTRQMMKQRSGRIINVSSIVGVSGNPGQANYVAAKAGVIGLTKSSAKELASRNITVNAIAPGFISTDMTD----------KLAKDVQDEMLKQIPL 209          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 63/222 (28.38%), Postives = 108/222 (48.65%), Query Frame = 1
Query:  127 EDVSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXE-KSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVP-HLRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELGS-DVGVTIVTPGFIESELTQGKFLTGEGRIQIDENLRDAQVSTIPV 783
            + V   VV+ITGAS GIG+ +A                  K  EEVA    E G    IT   DVSK  D  ++++  ++ +G +D +VNNAGI+   L   +   + + +++ +N  G    T+ AV   ++  +G+I+ +SS    +     + Y A+K  ++ F +T   E  S ++ V +V PGFI S++T           ++ E++    + TIP+
Sbjct:   72 QKVESPVVVITGASRGIGKAIALALGKAGCKVLVNYARSAKEAEEVAKQIEEYGG-QAITFGGDVSKATDVDAMMKTALDKWGTIDVVVNNAGITRDTLLIRMKQ-SQWDEVIALNLTGVFLCTQAAVKIMMKKKRGRIINISSVVGLIGNIGQANYAAAKGGVISFSKTAAREGASRNINVNVVCPGFIASDMT----------AELGEDMEKKILGTIPL 281          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: DHB2_HUMAN (Estradiol 17-beta-dehydrogenase 2 OS=Homo sapiens GN=HSD17B2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.875e-14
Identity = 55/187 (29.41%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  133 VSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREIGSPDVITIRADVSK---VDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPHLRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELGS-DVGVTIVTPG 681
            V  K V++TG   G+G  L                 E      A+  R   SP +  ++ D++K   + D  S V   +   G L  ++NNAG+       +++ +TD+KQ M +NF+G+V  T+  +P LR +KG++V +SS        R++ Y +SKAA+ +F   +R+EL    + V  + PG
Sbjct:   80 VDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVLNENG--PGAEELRRTCSPRLSVLQMDITKPVQIKDAYSKVAAMLQDRG-LWAVINNAGVLGFPTDGELLLMTDYKQCMAVNFFGTVEVTKTFLPLLRKSKGRLVNVSSMGGGAPMERLASYGSSKAAVTMFSSVMRLELSKWGIKVASIQPG 263          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: HSD_STREX (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Streptomyces exfoliatus PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 63/193 (32.64%), Postives = 96/193 (49.74%), Query Frame = 1
Query:  130 DVSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPHLRYT-KGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELGSD-VGVTIVTPGFIESELT 702
            D+SGK VIITG + G+G   A +              +   EE A TARE+G         DV+  +D + +V      FG +D LVNNAGIS+  +F +  ++  F+++++IN  G     +  +P ++    G IV +SSAA  +     S Y ASK  +    +   VELG+D + V  V PG   + +T
Sbjct:    3 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD---EEGAATARELGDAARYQ-HLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGIST-GMFLETESVERFRKVVDINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT 190          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: FABG5_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 5, chloroplastic (Fragment) OS=Brassica napus GN=bkr1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.905e-14
Identity = 62/220 (28.18%), Postives = 109/220 (49.55%), Query Frame = 1
Query:  133 VSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXE-KSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVP-HLRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELGS-DVGVTIVTPGFIESELTQGKFLTGEGRIQIDENLRDAQVSTIPV 783
            V   VV++TGAS GIG+ +A                  K  EEV+    E G  + IT   DVSK  D  S+++  ++ +G +D +VNNAGI+   L   +   + + +++++N  G    T+ A    ++  KG+I+ ++S    +     + Y A+KA ++ F +T   E  S ++ V +V PGFI S++T           ++ E++    + TIP+
Sbjct:   72 VESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEEYGG-EAITFGGDVSKEADVDSMMKTAVDKWGTIDVVVNNAGITRDTLLIRMKK-SQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMT----------AKLGEDMEKKILGTIPL 279          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.905e-14
Identity = 53/210 (25.24%), Postives = 100/210 (47.62%), Query Frame = 1
Query:  130 DVSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREI--GSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPHL--RYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELG-SDVGVTIVTPGFIESELTQGKFLTGEGRIQID 744
            D+  KVV+ITG S+G+G  +A  +              +  EE  D  +E+       I ++ DV+K +D  +LV+  +  FG LD ++NNAG+ +     ++ ++ ++ ++++ N  G+   +R A+ +      KG ++ +SS    +  P    Y ASK  +    ETL +E     + V  + PG + + +   KF     R  ++
Sbjct:    4 DLKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNE--EEALDAKKEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHEL-SLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKQMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVE 210          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.905e-14
Identity = 55/206 (26.70%), Postives = 100/206 (48.54%), Query Frame = 1
Query:  130 DVSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPH-LRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELGS-DVGVTIVTPGFIESELTQGKFL-TGEGRIQ 738
            +++ K V+ITG +SGIG      +             E   E +    R+  +  +  ++ D++    C+  VE  ++ FG LD L+NNAGI  VA   + + ++D+ +++ +N  G    ++ A+ H L   KG I+   S    +  P +  YNASK  ++   +++ V+     + V  V PG I++ L +  FL   EG ++
Sbjct:    2 NLTDKTVLITGGASGIGYAAVQAFLGQQANVVVADIDEAQGEAMV---RKENNDRLHFVQTDITDEAACQHAVESAVHTFGGLDVLINNAGIEIVAPIHE-MELSDWNKVLQVNLTGMFLMSKHALKHMLAAGKGNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSMAVDYAKHQIRVNCVCPGIIDTPLNEKSFLENNEGTLE 203          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: FABG_STAAW (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.406e-14
Identity = 59/216 (27.31%), Postives = 101/216 (46.76%), Query Frame = 1
Query:  142 KVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPH-LRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELGS-DVGVTIVTPGFIESELTQGKFLTGEGRIQIDENLRDAQVSTIPV 783
            K  ++TGAS GIG  +A +               K   E      +    D   I+A+V+  D+ +++++E ++ FG LD LVNNAGI+   L   +    ++  +++ N  G     + A P  LR   G I+ LSS    +  P  + Y A+KA ++   ++   EL S  + V  V PGFI S++T            + + L++  ++ IP+
Sbjct:    5 KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKE-QEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA----------LSDELKEQMLTQIPL 209          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: FABG_STAAS (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MSSA476) GN=fabG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.406e-14
Identity = 59/216 (27.31%), Postives = 101/216 (46.76%), Query Frame = 1
Query:  142 KVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPH-LRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELGS-DVGVTIVTPGFIESELTQGKFLTGEGRIQIDENLRDAQVSTIPV 783
            K  ++TGAS GIG  +A +               K   E      +    D   I+A+V+  D+ +++++E ++ FG LD LVNNAGI+   L   +    ++  +++ N  G     + A P  LR   G I+ LSS    +  P  + Y A+KA ++   ++   EL S  + V  V PGFI S++T            + + L++  ++ IP+
Sbjct:    5 KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKE-QEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA----------LSDELKEQMLTQIPL 209          
The following BLAST results are available for this feature:
BLAST of CX047557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
DHI2_RAT1.686e-1428.80Corticosteroid 11-beta-dehydrogenase isozyme 2 OS=... [more]
FABG_BACSU2.202e-1426.823-oxoacyl-[acyl-carrier-protein] reductase OS=Baci... [more]
FABG_ARATH2.202e-1428.383-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
DHB2_HUMAN2.875e-1429.41Estradiol 17-beta-dehydrogenase 2 OS=Homo sapiens ... [more]
HSD_STREX3.755e-1432.643-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
FABG5_BRANA4.905e-1428.183-oxoacyl-[acyl-carrier-protein] reductase 5, chlo... [more]
DHG3_BACME4.905e-1425.24Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
BACC_BACSU4.905e-1426.70Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
FABG_STAAW6.406e-1427.313-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAS6.406e-1427.313-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_14H02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H02-P3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047557 ID=CX047557; Name=CX047557; organism=Citrus sinensis; type=EST; length=832bp
ATGGATTTGATTAACAAGTTCCTTAATCTTGTGGCACCCCCCTTCACCTT
ATTCTCCCTGTGCCTCTTCTTACCACCATTTCTATGTTACAAGTTCTTAC
TCTCCGTCTTTAACTCCATATTCAGTGAAGATGTTTCCGGAAAGGTCGTC
ATCATCACCGGTGCTTCCTCCGGCATCGGAGAGCACTTGGCGTATGAGTA
TGCTAGAAGAGGAGCCTGCCTAGCTCTATGCGCCCGCAGGGAAAAGAGTC
TTGAAGAAGTTGCCGATACAGCGCGTGAAATCGGCTCTCCTGATGTTATC
ACGATTCGTGCTGACGTTTCAAAAGTTGATGACTGTAGGAGCCTTGTTGA
AGAAACTATGAATCACTTTGGCAGATTGGATCATCTTGTGAATAATGCTG
GGATTTCTTCAGTTGCCCTGTTCGAAGATATTGTTAATATCACCGATTTT
AAGCAAATAATGAACATAAATTTCTGGGGATCAGTTTATACCACTCGATT
TGCGGTTCCACATCTTAGATATACCAAAGGCAAGATCGTGGTTTTATCAT
CCGCTGCTTCATGGCTAACTGCACCAAGAATGAGCTTTTACAATGCAAGC
AAAGCGGCGTTGGTACTCTTTTTCGAAACATTAAGGGTCGAACTTGGTTC
CGACGTTGGTGTAACAATTGTTACGCCTGGGTTCATAGAGTCGGAATTAA
CCCAAGGAAAATTCTTAACGGGAGAAGGCAGAATTCAGATAGATGAAAAC
TTAAGAGATGCTCAAGTGAGCACTATCCCAGTTCAATCAGCGTGGTCATG
TGCAAAGGCGATAGTGAACAGTGTATGCCGCG
back to top