CX047541

Overview
NameCX047541
Unique NameCX047541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.972e-72
Identity = 137/212 (64.62%), Postives = 168/212 (79.25%), Query Frame = -1
Query:  200 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 835
            G E+EL+AIAT  RIVPRF EL+ EKLG AGLVRE +FG  +DRML IE C N++AVTIF+RGGNKM+I+E KR++HDALCV RNL+R++ IVYGGG+AE+A +I V   ADR  G+EQYA RAFADAL++IPMALAENSGL PI+ LS +K +QI     + GID    GTNDM+EQ V ETL+ K++QI LATQVV+MILKIDDV  P +
Sbjct:  326 GPEIELLAIATNARIVPRFSELSKEKLGTAGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMIIDEAKRALHDALCVIRNLVRDSRIVYGGGSAELAAAIQVAKEADRIDGIEQYAFRAFADALESIPMALAENSGLAPIDALSDLKAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQISLATQVVRMILKIDDVRVPDD 537          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 246.899 bits (629), Expect = 1.048e-64
Identity = 119/208 (57.21%), Postives = 159/208 (76.44%), Query Frame = -1
Query:  212 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 835
            G ELE IAI+T GRIVPRFQ+L+ +KLG    + E+ FGTT+DRML IE    ++ VT F+RG NKM+++E +R++HD+LCV RNL++++ +VYGGGAAE+  S+AV   AD+  G++QYA R FA ALD IPM LAENSGL PI TLS +K++Q++E   N G+DC   G+NDM+E  V +  IGK+QQILLATQ+ +MILKID+VI
Sbjct:  348 GQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVI 555          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPE_ENCCU (T-complex protein 1 subunit epsilon OS=Encephalitozoon cuniculi GN=CCT5 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.059e-49
Identity = 101/209 (48.33%), Postives = 142/209 (67.94%), Query Frame = -1
Query:  209 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 835
            G ELEL+A+ TGG IV RF++L    LGKA  VRE+S GT  D+++ +E+   S+AVTI +RG N ++IEE KRSI DALC  RN++ N+ IVYGGG++E++CS+A++  A  Y G E+ AI  F  AL+ IP+ LA NSG  PI   S ++  Q+   N + G+DC   G  DM++  VF+ L  K +Q  +ATQ+V M+LKID+V+S
Sbjct:  321 GHELELLAVHTGGSIVARFEDLEESDLGKAR-VREESLGTENDKIIVVENEGCSKAVTILVRGANDLVIEEAKRSIRDALCAVRNILTNSRIVYGGGSSEMSCSLALERIATGYSGEEREAILGFGRALEEIPLCLARNSGHDPIGYSSDLRKLQMESKNFHLGVDCLGDGEQDMKKLGVFDALSSKIRQFQMATQLVTMVLKIDNVVS 528          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.931e-40
Identity = 92/207 (44.44%), Postives = 131/207 (63.29%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            ++E +A ATG +IV   ++LTPE LG+A LV E+      + M+++E C N +AVTI IRGG + +++E +R++ DA+ V ++++ +  I+ GGGAAEI  SI +D  A    G EQ AI AFA+AL  IP  LAEN+GL PIETL  V     +E  P  GID  +    DM E+ V E +  K+Q I  A++   MIL+IDDVI+
Sbjct:  320 DMEKLAKATGAKIVTNIRDLTPEDLGEAELVEERK--VAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDILEDGKIIAGGGAAEIELSIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH-KEKGPTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIA 523          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.433e-39
Identity = 91/210 (43.33%), Postives = 132/210 (62.86%), Query Frame = -1
Query:  200 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 829
            ++E +A ATG +IV   ++LTPE LG+A LV E+      + M+++E C N +AVTI IRGG + +++E +R++ DA+ V ++++ +  I+ GGGA+EI  SI +D  A    G EQ AI AFA+AL  IP  LAEN+GL PIETL  V     +E     GID  +    DM E+ V E +  K+Q I  A++   MIL+IDDVI+ S+
Sbjct:  320 DMEKLAKATGAKIVTNIRDLTPEDLGEAELVEERK--VAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAIKVVKDILEDGKIIAGGGASEIELSIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH-KEKGQTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 5.418e-37
Identity = 88/210 (41.90%), Postives = 129/210 (61.43%), Query Frame = -1
Query:  200 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 829
            ++E +A ATG +IV   ++LTPE LG+A LV ++      + M+++E C N +AVTI IRGG + +++E +R++ DA+ V ++++ +  IV  GGA EI  SI +D  A    G EQ AI AFA+AL  IP  LAEN+GL PIETL  V     +E  P  G+D  +    DM E+ V   +   +Q I  A++   MIL+IDDVI+ S+
Sbjct:  320 DMEKLAKATGAKIVTNVRDLTPEDLGEAELVEQRK--VAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELSIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH-KEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.207e-36
Identity = 88/207 (42.51%), Postives = 124/207 (59.90%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            ++E +A ATG RIV +  +LTPE LG+AGLV E+      D M+++E C + +AVTI  RG  + ++EE  R+I DA+ V +  +    IV GGGA EI  +  +   A+   G EQ A++AFADAL+ IP  LAENSGL PI+ L  ++    +E     G+D  +    DM E+ V E L  K Q I  AT+   M+L+IDDVI+
Sbjct:  317 DMEKLAKATGARIVTKIDDLTPEDLGEAGLVEERK--VAGDAMIFVEQCKHPKAVTILARGSTEHVVEEVARAIDDAIGVVKCALEEGKIVAGGGATEIELAKRLRKFAESVAGREQLAVKAFADALEVIPRTLAENSGLDPIDMLVKLRAAHEKEGGEVYGLDVFEGEVVDMLEKGVVEPLKVKTQAIDSATEASVMLLRIDDVIA 521          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.207e-36
Identity = 87/210 (41.43%), Postives = 129/210 (61.43%), Query Frame = -1
Query:  200 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 829
            ++E +A ATG +IV   ++LTPE LG+A LV ++      + M+++E C N +AVTI IRGG + +++E +R++ DA+ V ++++ +  IV  GGA EI  +I +D  A    G EQ AI AFA+AL  IP  LAEN+GL PIETL  V     +E  P  G+D  +    DM E+ V   +   +Q I  A++   MIL+IDDVI+ S+
Sbjct:  320 DMEKLAKATGAKIVTNVRDLTPEDLGEAELVEQRK--VAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELAIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAH-KEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.577e-36
Identity = 86/210 (40.95%), Postives = 129/210 (61.43%), Query Frame = -1
Query:  200 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 829
            ++E +A ATG +IV   ++LTPE LG+A LV ++      + M+++E C N +AVTI IRGG + +++E +R++ DA+ V ++++ +  I+  GGA EI  +I +D  A    G EQ AI AFA+AL  IP  LAEN+GL P+ETL  V     +E  P  G+D  +    DM E+ V   L   +Q I  A++   MIL+IDDVI+ S+
Sbjct:  320 DMEKLAKATGAKIVTNVRDLTPEDLGEAELVEQRK--VAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKILPAGGAPEIELAIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPVETLVKVIAAH-KEKGPTIGVDVFEGEPADMMEKGVIAPLRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.059e-36
Identity = 86/210 (40.95%), Postives = 126/210 (60.00%), Query Frame = -1
Query:  200 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 829
            +++ +A ATG RIV    +L+ E LG+A +V EK      D+M+++E C + +AVTI IRGG + +++E +R+I DA+ V    + +  +V GGGA E+  +  +   AD   G EQ A+ AFADAL+ IP  LAENSGL PI+ L  ++ +   +     GID  D    DM E+ V E L  K Q +  AT+  +MIL+IDDVI+  E
Sbjct:  322 DMQKLARATGARIVTNIDDLSEEDLGEAEVVEEKK--VAGDKMIFVEGCKDPKAVTILIRGGTEHVVDEAERAIEDAIGVVAAALEDGKVVAGGGAPEVEVARQLRDFADGVEGREQLAVEAFADALEIIPRTLAENSGLDPIDVLVQLRAKH-EDGQVTAGIDVYDGDVKDMLEEGVVEPLRVKTQALASATEAAEMILRIDDVIAARE 528          
The following BLAST results are available for this feature:
BLAST of CX047541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPE_CAEEL3.972e-7264.62T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPE_YEAST1.048e-6457.21T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
TCPE_ENCCU8.059e-4948.33T-complex protein 1 subunit epsilon OS=Encephalito... [more]
THS_PYRAB8.931e-4044.44Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THS_PYRHO4.433e-3943.33Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THSB_THEK15.418e-3741.90Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THS_METJA1.207e-3642.51Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THSB_PYRKO1.207e-3641.43Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THS_DESSY1.577e-3640.95Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THS_METKA2.059e-3640.95Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14G06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14G06-N11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047541 ID=CX047541; Name=CX047541; organism=Citrus sinensis; type=EST; length=835bp
TTTTTAAACAAGCAAAATCATCAATTCTCACTACCAGAAAAAGTAACTCA
CGGTACAATTTTAACAAAAACCAACCCATAACCTTTAAAGTCAGTCGTTA
TCAAGTGGACAGGGTCGATACCAAGCCAACAAAATACATGAAATGCATTC
TTGGTGAAGCAAAATCAAACAGAAACTTAGACCTTAGAATGAATCAATAT
TCAGAGGGGGAAATGACATCATCAATTTTCAAAATCATCTTCACAACTTG
TGTTGCGAGAAGAATCTGCTGCTGCTTCCCAATCAAAGTCTCAAAGACAT
TTTGCTCACGCATGTCATTGGTTCCAACATCATTGCAGTCTATTCCGCAG
TTTGGATTATTCTCCCTAATTTGCTGATTTTTCACAGCCGATAGCGTCTC
AATAGGTTGGAGACCACTATTTTCTGCAAGTGCCATCGGGATAGCATCCA
ACGCATCTGCAAATGCCCTGATAGCATACTGTTCAACTCCCGGATATCTA
TCTGCAGCTGCATCTACAGCAATTGAGCAAGCTATCTCAGCTGCACCCCC
GCCATACACAATAGAATTGTTGCGAATCAGATTCCTAGCCACACACAAGG
CATCATGTATGCTCCGCTTGGTCTCCTCTATCATCATTTTGTTACCTCCA
CGGATGAAAATGGTTACAGCCCTAGAATTTGCACAGTGTTCAATGTACAG
CATTCTATCTTGTGTAGTACCAAAAGACTTTTCTCGAACCAAACCAGCCT
TTCCAAGTTTTTCTGGTGTCAACTCCTGAAACCTTGGAACAATTCTTCCA
CCTGTGGCTATGGCAATCAGCTCCAATTCTACACC
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