CX047541

Overview
NameCX047541
Unique NameCX047541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 9.564e-34
Identity = 78/208 (37.50%), Postives = 124/208 (59.62%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            ++E I    G + V    + T + LG A L  E S   +  ++  I  C +  + VTI +RG NK++IEE +RSIHDALCV R L++  +++ GGGA EI  ++ +   +    G+E Y +RAFADA++ IP  LAEN+GL PI T++ ++N+   +     GI+    G +++ E+ V + L+     + LAT+ V+ ILKIDDV++
Sbjct:  332 DIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVSLNGS-GKLFKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRH-AQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.249e-33
Identity = 77/207 (37.20%), Postives = 126/207 (60.87%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            +LE +A ATGGR++    ELT + LG A LV E+  G  +D+M+++E   N ++V+I IRGG + +++ET+R++ DAL    ++IR+   V GGGA EI  +  +   A +  G EQ AI A+A+A++ + M LAEN+GL PI+ L  +++    E N   G++       DM +  V E  + K   +  AT+ V ++L+IDD+++
Sbjct:  326 DLEKLARATGGRVISNIDELTSQDLGYAALVEERKVG--EDKMVFVEGAKNPKSVSILIRGGLERVVDETERALRDALGTVADVIRDGRAVAGGGAVEIEIAKRLRKYAPQVGGKEQLAIEAYANAIEGLIMILAENAGLDPIDKLMQLRSLHENETNKWYGLNLFTGNPEDMWKLGVIEPALVKMNAVKAATEAVTLVLRIDDIVA 530          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.131e-33
Identity = 82/209 (39.23%), Postives = 123/209 (58.85%), Query Frame = -1
Query:  203 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 829
            ++E ++ ATG  IV   ++L+PE LG+AG+V EK    + + M+++E C   +AVTI +RG  + ++ E +R+I DA+ V    + +  +V GGGA EI  +  +   AD   G EQ A+ AFA+AL+ +P  LAEN+GL  I+ L  V  +   E +   GID  D    DM+E  V E    K+Q I  A +  +MIL+IDDVI+ S
Sbjct:  313 DMEKLSKATGANIVTNIEDLSPEDLGEAGVVSEKKI--SGEEMIFVEECKEPKAVTILVRGSTEHVVSEVERAIEDAIGVVAATVEDGKVVAGGGAPEIEIAKRLKDYADSISGREQLAVSAFAEALEIVPKTLAENAGLDSIDVL--VDLRAAHEESTYMGIDVFDGKIVDMKEAGVIEPHRVKKQAIQSAAEAAEMILRIDDVIAAS 517          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.634e-33
Identity = 81/207 (39.13%), Postives = 122/207 (58.94%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            +LE +A ATGGR+V    ELTP+ LG A LV E+  G  +D+M+++E   N +AV+I IRGG + +++ET+R++ DAL    ++IR+   V GGGA E+  +  +   A +  G EQ AI A+A AL+ + M L EN G  PI+ L  +++    E N   GI+       DM +  V E  + K   I  AT+   +IL+IDD+I+
Sbjct:  327 DLEKLARATGGRVVSNIDELTPQDLGYAALVEERKVG--EDKMVFVEGAKNPKAVSILIRGGLERVVDETERALRDALGTVADVIRDGRAVAGGGAVELEIAKRLRKYAPQIGGKEQLAIEAYASALENLVMILIENGGYDPIDLLVKLRSAHENEANKWYGINVFTGQVEDMWKLGVIEPAVVKMNAIKAATEAATLILRIDDLIA 531          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.634e-33
Identity = 80/207 (38.65%), Postives = 122/207 (58.94%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            ++E +A ATG +++   ++++ E LG+A LV E+  G   ++M+++  C N +AVTI +RGG + ++EE  R I DA+      + +  +V G GA EI  S+ +   A    G EQ A+ AFA AL+ IP  LAEN+GL PI+ L  +K     +     G+D +     DM+E+ VFE L  K Q I  AT+V  MIL+IDD+I+
Sbjct:  320 DMEKLAKATGAKVLTDLRDISSEDLGEAALVEERKVG--DEKMVFVTGCKNPKAVTILVRGGTEHVVEEIARGIEDAVRAVACAVEDGKVVVGAGAPEIEVSLKLREWAPSLGGREQLAVEAFATALEIIPRTLAENAGLDPIDVLVELKAAH-EKGQKYAGVDVDTGKVVDMKERGVFEPLRVKTQAIGSATEVAVMILRIDDIIA 523          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.634e-33
Identity = 82/207 (39.61%), Postives = 126/207 (60.87%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            ++E +A ATG +IV   ++LTPE LG A +V E+      + M+++E C N +AVTI IRGG + +I+E +R++ DA+ V ++++ + +++  GGA EI  +I +D  A +  G E  AI  FADAL  IP  LAEN+GL  +E L  V ++  +      GID  +    DM E+ + E L  K+Q I  A++   MIL+IDDVI+
Sbjct:  320 DMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG--ENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH-KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIA 523          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.634e-33
Identity = 82/207 (39.61%), Postives = 126/207 (60.87%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            ++E +A ATG +IV   ++LTPE LG A +V E+      + M+++E C N +AVTI IRGG + +I+E +R++ DA+ V ++++ + +++  GGA EI  +I +D  A +  G E  AI  FADAL  IP  LAEN+GL  +E L  V ++  +      GID  +    DM E+ + E L  K+Q I  A++   MIL+IDDVI+
Sbjct:  320 DMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG--ENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH-KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIA 523          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.199e-33
Identity = 76/206 (36.89%), Postives = 122/206 (59.22%), Query Frame = -1
Query:  215 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 829
            ++E I    G + V      T +KLGKA LV E   GT+  +++ +    N  + VT+  RG NK++++E +RS+HDALCV R+L++   ++ GGGA EI  S  V A +    G+  Y +RA+A+AL+ IP  LAEN+GL PI  ++ ++N+   +   N GI+       ++ ++NV + L+     + LAT+ V M+LKIDD+
Sbjct:  327 DIEFICNTIGCQPVANIDSFTADKLGKADLVEE--VGTSDGKIVKVTGIPNPGKTVTVLCRGSNKLVLDEAERSLHDALCVIRSLVKKKFLIAGGGAPEIEVSQQVTAFSKTLTGITSYCVRAYAEALEIIPYTLAENAGLHPISIVTELRNKH-AQGEINSGINVRKGAITNILQENVVQPLLVSTSALTLATETVVMLLKIDDI 529          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.057e-32
Identity = 81/207 (39.13%), Postives = 121/207 (58.45%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            +LE +A ATGGR+V    ELT + LG A LV E+  G  +D+M++IE   N +AV+I IRGG + +++ET+R++ DAL    +++R+   + GGGA E   +  +   A +  G EQ AI A+A+AL+++ M L EN G  PIE L  +++    E N   GI+       DM    V E  + K   I  AT+   +IL+IDD+IS
Sbjct:  327 DLEKLARATGGRVVSNIDELTSQDLGYATLVEERKIG--EDKMVFIEGAKNPKAVSILIRGGLERVVDETERALRDALGTVADVVRDGRAIAGGGAVETEIAKRLRKYAPQVGGKEQLAIEAYANALESLVMILIENGGFDPIELLVKLRSAHENETNKWHGINVYTGQIQDMWSLGVIEPAVVKMNAIKAATEASTLILRIDDLIS 531          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.057e-32
Identity = 79/201 (39.30%), Postives = 118/201 (58.71%), Query Frame = -1
Query:  227 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILK 829
            +LE +  ATGGRIV   ++LTPE LG A LV E+  G  +D+M++IE C N R+V+I IRGG + +++E +RSI DAL    + +R+  ++ GGGAAEI  +  +   A R  G EQ AI AFA AL+ + + L EN+GL PI+ +  ++    RE+     ID       +MRE+ V E +      I   T+   +I++
Sbjct:  304 DLEKLERATGGRIVSNIEDLTPEDLGYAALVEERKVG--EDKMVFIEGCKNPRSVSIVIRGGLERLVDEAERSIRDALSAVADALRDGKVIPGGGAAEIELAKHIRRLATRVGGKEQLAIEAFAKALEGLAVTLVENAGLDPIDMVMKLRAAHEREDGKYLSIDLATGDLVNMREKGVIEPVSILANAIKAGTEAATIIMR 502          
The following BLAST results are available for this feature:
BLAST of CX047541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPD_MOUSE9.564e-3437.50T-complex protein 1 subunit delta OS=Mus musculus ... [more]
THSB_SULSO1.249e-3337.20Thermosome subunit beta OS=Sulfolobus solfataricus... [more]
THSB_METTH2.131e-3339.23Thermosome subunit beta OS=Methanobacterium thermo... [more]
THSB_SULTO3.634e-3339.13Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
THSB_ARCFU3.634e-3338.65Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
THSA_THEK13.634e-3339.61Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO3.634e-3339.61Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
TCPD_DICDI6.199e-3336.89T-complex protein 1 subunit delta OS=Dictyostelium... [more]
THSB_SULAC1.057e-3239.13Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]
THSB_DESMO1.057e-3239.30Thermosome subunit beta (Fragment) OS=Desulfurococ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14G06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14G06-N11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047541 ID=CX047541; Name=CX047541; organism=Citrus sinensis; type=EST; length=835bp
TTTTTAAACAAGCAAAATCATCAATTCTCACTACCAGAAAAAGTAACTCA
CGGTACAATTTTAACAAAAACCAACCCATAACCTTTAAAGTCAGTCGTTA
TCAAGTGGACAGGGTCGATACCAAGCCAACAAAATACATGAAATGCATTC
TTGGTGAAGCAAAATCAAACAGAAACTTAGACCTTAGAATGAATCAATAT
TCAGAGGGGGAAATGACATCATCAATTTTCAAAATCATCTTCACAACTTG
TGTTGCGAGAAGAATCTGCTGCTGCTTCCCAATCAAAGTCTCAAAGACAT
TTTGCTCACGCATGTCATTGGTTCCAACATCATTGCAGTCTATTCCGCAG
TTTGGATTATTCTCCCTAATTTGCTGATTTTTCACAGCCGATAGCGTCTC
AATAGGTTGGAGACCACTATTTTCTGCAAGTGCCATCGGGATAGCATCCA
ACGCATCTGCAAATGCCCTGATAGCATACTGTTCAACTCCCGGATATCTA
TCTGCAGCTGCATCTACAGCAATTGAGCAAGCTATCTCAGCTGCACCCCC
GCCATACACAATAGAATTGTTGCGAATCAGATTCCTAGCCACACACAAGG
CATCATGTATGCTCCGCTTGGTCTCCTCTATCATCATTTTGTTACCTCCA
CGGATGAAAATGGTTACAGCCCTAGAATTTGCACAGTGTTCAATGTACAG
CATTCTATCTTGTGTAGTACCAAAAGACTTTTCTCGAACCAAACCAGCCT
TTCCAAGTTTTTCTGGTGTCAACTCCTGAAACCTTGGAACAATTCTTCCA
CCTGTGGCTATGGCAATCAGCTCCAATTCTACACC
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