CX047541

Overview
NameCX047541
Unique NameCX047541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.356e-32
Identity = 78/208 (37.50%), Postives = 121/208 (58.17%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCAN-SRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            ++E +      R +       PE L  A LV E S G++  + + +    N  + V+I +RG NK+++EE +RS+HDALCV R L++  + + GGGA EI  +I + A A    GV+ Y  RAFA+AL+ IP  LAEN+GL PI T++ ++N+   +   N GI+       D+  +NV + L+     I LA++ V+ ILKIDD+I+
Sbjct:  326 DIEFVCKTLNCRPIASLDHFLPEHLVNADLVEEVSSGSS--KFVKVTGIQNMGQTVSIVVRGSNKLVLEEAERSLHDALCVVRCLVKKRAQIAGGGAPEIEMAIQLAAHAQTLEGVDAYCFRAFANALEVIPSTLAENAGLNPIATVTELRNRH-AQGEKNAGINVRKGAITDILAENVVQPLLVSTSSITLASETVRSILKIDDIIN 530          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.077e-32
Identity = 79/207 (38.16%), Postives = 121/207 (58.45%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            ++E +A ATG +IV    +LTP  LG+A  V E+  G   DRM ++  C N +AV+I IRGG   ++ E +R+++DA+ V      +   ++GGGA E   ++ +   A+   G EQ AI AFA AL+ IP  LAEN+G+ PI TL  +K +   +   + G+D ++ G  DM+ + V + L  K   +  A +V  MIL+IDDVI+
Sbjct:  317 DMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIG--DDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKAEH-EKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIA 520          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.018e-32
Identity = 79/207 (38.16%), Postives = 121/207 (58.45%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            +++ I  ATG R+V    +LT E LG+AG++ EK      + + +IE C + +A++I +RG  K + EE +R++ DA+ V  + + +  +V GGGA E+  +  +   AD   G EQ A+ AFADAL+ +P  LAEN+GL  I+ L  V  +   E +P  GID  D    DM+E  V E    K+Q I  A +  +MIL+IDD+I+
Sbjct:  313 DIKRIEKATGARLVTNIDDLTAEDLGEAGVIYEKKI--FDEVLTFIEECRDPKAISIILRGSTKHVAEEMERALEDAIGVVASTLEDREVVAGGGAPEVEIARKLREYADTISGREQLAVSAFADALEIVPKTLAENAGLDSIDVL--VDLRAAHEESPYMGIDVFDGNIVDMKEAGVIEPQRVKKQAIQSAAEAAEMILRIDDMIA 515          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.169e-31
Identity = 83/210 (39.52%), Postives = 122/210 (58.10%), Query Frame = -1
Query:  203 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDC-NDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 829
            ++E +  A G RI+   ++ TPE LG A LV E+  G   D+M++IE   N RAV I +RG N M ++E +RS++DAL   RN++    IV GGGA E   ++ +   A    G EQ AI  FA+AL+ IPM LAE +G++PI+ L  ++ +  +    N GID  N    +DM + NV E +  K Q +  A +    ILKIDD+++ S
Sbjct:  326 DIEKLEKALGARIISSIKDATPEDLGYAELVEERRIGN--DKMVFIEGAKNPRAVNILLRGSNDMALDEAERSLNDALHSLRNVLMKPMIVAGGGAVESELALRLREYARSVGGKEQLAIEKFAEALEEIPMILAETAGMEPIQALMDLRARHAK-GLVNSGIDAVNGKIADDMMKINVIEPVRVKSQVLKSAVEAATAILKIDDLVAAS 532          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.169e-31
Identity = 79/210 (37.62%), Postives = 124/210 (59.05%), Query Frame = -1
Query:  200 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 829
            +L+ +A ATGGR+V    ++  + LG AG V +K  G   D  +++E   ++++VT+ +RGG + +++E +R+I D+L V R  + +  ++ GGGA E   S+ +   AD   G EQ A+ AFA+ALD IP  LAEN+GL PI++L  ++++         G+D       DM E+ V E L  K Q I  AT+   MIL+IDDVI+  +
Sbjct:  318 DLKRLARATGGRVVSSLDDIEADDLGFAGSVGQKDVGG--DERIFVEDVEDAKSVTLILRGGTEHVVDELERAIEDSLGVVRTTLEDGKVLPGGGAPETELSLQLREFADSVGGREQLAVEAFAEALDIIPRTLAENAGLDPIDSLVDLRSRH-DGGEFAAGLDAYTGEVIDMEEEGVVEPLRVKTQAIESATEAAVMILRIDDVIAAGD 524          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.527e-31
Identity = 80/208 (38.46%), Postives = 128/208 (61.54%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVG-TNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            ++E +A ATG +IV   ++L PE LG A LV E+  G  +D+M++IE   N ++VTI +RG N M+++E +R+I DAL   RN++R   IV GGGA E+  ++ +   A    G +Q AI A+A+AL+ IP  LAE++G+  +E L  +++    +     G++  +     DM + NV+E ++ K+Q I  A++    ILKIDDVI+
Sbjct:  322 DIEKVAKATGAKIVTSLRDLKPEYLGYAELVEERKVG--EDKMVFIEGAKNPKSVTILLRGANDMLLDEAERNIKDALHGLRNILREPKIVGGGGAVEVELALKLKEFARTVGGKQQLAIEAYAEALETIPTVLAESAGMDALEALLKLRSLH-SQGYKFAGVNVLEGKIEEDMTKINVYEPVLVKKQVIKSASEAAISILKIDDVIA 526          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.605e-31
Identity = 83/208 (39.90%), Postives = 121/208 (58.17%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGID-CNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            ++E +  A G RI+   ++ TPE LG A LV E+  G   D+M++IE   N +AV I +RG N M ++E +RSI+DAL   RN++    IV GGGA E   ++ +   A    G EQ AI  FA+AL+ IPM LAE +G++PI+TL  ++ +  +    N G+D  N    +DM   NV E +  K Q +  A +    ILKIDD+I+
Sbjct:  326 DIEKLEKALGARIISSIKDATPEDLGYAELVEERRVGN--DKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALHSLRNVLMKPMIVAGGGAVETELALRLREYARSVGGKEQLAIEKFAEALEEIPMILAETAGMEPIQTLMDLRAKHAK-GLINAGVDVMNGKIADDMLALNVLEPVRVKAQVLKSAVEAATAILKIDDLIA 530          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.898e-31
Identity = 81/207 (39.13%), Postives = 123/207 (59.42%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            ++E +A ATG +IV   ++LTPE LG A +V E+      + M+++E C N +AVTI IRGG + +I+E +R++ DA+ V ++++ + +++  GGA EI  +I+VD  A +  G E  AI  FADAL  IP  LAEN+GL  +E L  V ++  +      GID       DM E+ +   L   +Q I  A   + MIL+IDDVI+
Sbjct:  320 DMEKLAKATGAKIVTNVKDLTPEDLGYAEIVEERKLAG--ENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAISVDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEILVKVISEH-KNKGLGIGIDVFAGEPADMLERGIIAPLRVTKQAIKSARAAI-MILRIDDVIA 522          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.912e-30
Identity = 81/210 (38.57%), Postives = 123/210 (58.57%), Query Frame = -1
Query:  209 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVG---TNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 829
            ++E +  A G RI+   ++ TPE LG A LV E+  G   D+M++IE   N +AV I +RG N M ++E +RSI+DAL   RN++    I+ GGGA E+  ++ +   A    G EQ AI AFADAL+ IP+ LAE +GL+ I +L  ++ +  +    N G+D   +G    +D+   N+ E +  K Q +  AT+    ILKIDD+I+
Sbjct:  325 DIEKLEKALGARIISSIKDATPEDLGYAELVEERRVGN--DKMVFIEGAKNLKAVNILLRGSNDMALDEAERSINDALHALRNILLEPVILPGGGAIELELAMKLREYARSVGGKEQLAIEAFADALEEIPLILAETAGLEAISSLMDLRARHAK-GLSNTGVDV--IGGKIVDDVYALNIIEPIRVKSQVLKSATEAATAILKIDDLIA 529          
BLAST of CX047541 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.429e-29
Identity = 72/208 (34.62%), Postives = 123/208 (59.13%), Query Frame = -1
Query:  215 ELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRA---VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 829
            E+E ++ ATG + +      T ++LG A +V E    ++  R++ I+  +       V+I  RG N+++++ET+RSIHDALCV R L++  +++ GGGA EI  S  + + A++  GVEQ+  + FA AL+ IP  LAEN+GL  I  ++ ++N+       N GI     G ++  +++V + ++     I LA++ VK IL+IDD+
Sbjct:  325 EIEFLSKATGCKPIADIDNFTEDRLGSADVVEE--IESSGSRIVKIDGVSAKNVKPTVSIVCRGANQLVLDETERSIHDALCVVRCLVKEKALIAGGGAPEIEVSRVLMSEANKLSGVEQFVYQEFAQALEVIPTTLAENAGLNSINVVTDLRNRH-ANGEKNAGISVRRSGASNTYDEHVLQPVLVSSSAITLASECVKSILRIDDI 529          
The following BLAST results are available for this feature:
BLAST of CX047541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPD_AEDTR2.356e-3237.50T-complex protein 1 subunit delta OS=Aedes triseri... [more]
THSA_THEAC3.077e-3238.16Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THSA_METTH4.018e-3238.16Thermosome subunit alpha OS=Methanobacterium therm... [more]
THSA_SULAC1.169e-3139.52Thermosome subunit alpha OS=Sulfolobus acidocaldar... [more]
THS1_HALVO1.169e-3137.62Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
THSA_AERPE1.527e-3138.46Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
THSA_SULTO2.605e-3139.90Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
THSA_THEK89.898e-3139.13Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_SULSO4.912e-3038.57Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
TCPD_DEBHA1.429e-2934.62T-complex protein 1 subunit delta OS=Debaryomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14G06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14G06-N11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047541 ID=CX047541; Name=CX047541; organism=Citrus sinensis; type=EST; length=835bp
TTTTTAAACAAGCAAAATCATCAATTCTCACTACCAGAAAAAGTAACTCA
CGGTACAATTTTAACAAAAACCAACCCATAACCTTTAAAGTCAGTCGTTA
TCAAGTGGACAGGGTCGATACCAAGCCAACAAAATACATGAAATGCATTC
TTGGTGAAGCAAAATCAAACAGAAACTTAGACCTTAGAATGAATCAATAT
TCAGAGGGGGAAATGACATCATCAATTTTCAAAATCATCTTCACAACTTG
TGTTGCGAGAAGAATCTGCTGCTGCTTCCCAATCAAAGTCTCAAAGACAT
TTTGCTCACGCATGTCATTGGTTCCAACATCATTGCAGTCTATTCCGCAG
TTTGGATTATTCTCCCTAATTTGCTGATTTTTCACAGCCGATAGCGTCTC
AATAGGTTGGAGACCACTATTTTCTGCAAGTGCCATCGGGATAGCATCCA
ACGCATCTGCAAATGCCCTGATAGCATACTGTTCAACTCCCGGATATCTA
TCTGCAGCTGCATCTACAGCAATTGAGCAAGCTATCTCAGCTGCACCCCC
GCCATACACAATAGAATTGTTGCGAATCAGATTCCTAGCCACACACAAGG
CATCATGTATGCTCCGCTTGGTCTCCTCTATCATCATTTTGTTACCTCCA
CGGATGAAAATGGTTACAGCCCTAGAATTTGCACAGTGTTCAATGTACAG
CATTCTATCTTGTGTAGTACCAAAAGACTTTTCTCGAACCAAACCAGCCT
TTCCAAGTTTTTCTGGTGTCAACTCCTGAAACCTTGGAACAATTCTTCCA
CCTGTGGCTATGGCAATCAGCTCCAATTCTACACC
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