CX047540

Overview
NameCX047540
Unique NameCX047540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047540 vs. ExPASy Swiss-Prot
Match: OLEO3_MAIZE (Oleosin Zm-II OS=Zea mays GN=OLE18 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = -2
Query:  332 GPSASKVLAVLAMLPLGGTFLALAGVTLTGTIIGLCVTTPLFIIFSXXXXXXXXXXXXXVTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKRVAGIADYVGQKTKEVGQDIQSKVHEAG 715
            GP+AS+ L V  + PLGG  L L+G+ LT +++GL V TP+F+IFS             V GFLTSGA GL  LSSL+ + +  RQ     P+  ++A++R+A  A   G KT + GQ IQ +  EAG
Sbjct:   43 GPTASQALTVATLFPLGGLLLVLSGLALTASVVGLAVATPVFLIFSPVLVPAALLIGTAVMGFLTSGALGLGGLSSLTCLANTARQAFQRTPDYVEEARRRMAEAAAQAGHKTAQAGQAIQGRAQEAG 170          
BLAST of CX047540 vs. ExPASy Swiss-Prot
Match: OLEO2_ORYSJ (Oleosin 18 kDa OS=Oryza sativa subsp. japonica GN=OLE18 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.475e-21
Identity = 54/131 (41.22%), Postives = 76/131 (58.02%), Query Frame = -2
Query:  320 PSASKVLAVLAMLPLGGTFLALAGVTLTGTIIGLCVTTPLFIIFSXXXXXXXXXXXXXVTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKRVAGIADYVGQKTKEVGQDIQSKVHEAGGKTG 712
            PSAS+ L V  + PLGG  L L+G+ L  +++GL V TP+F+IFS             V GFLTSGA GL  LSSL+++ +  RQ     P+  +QA++R+A  A + G KT + G  IQ +  +AG   G
Sbjct:   31 PSASQALTVATLFPLGGLLLVLSGLALAASVVGLAVATPVFLIFSPVLVPAALLIGLAVAGFLTSGALGLGGLSSLTFLANTARQAFQRTPDYVEQARRRMAEAAAHAGHKTAQAGHAIQGRADQAGTGAG 161          
BLAST of CX047540 vs. ExPASy Swiss-Prot
Match: OLEO2_ORYSI (Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OLE18 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.475e-21
Identity = 54/131 (41.22%), Postives = 76/131 (58.02%), Query Frame = -2
Query:  320 PSASKVLAVLAMLPLGGTFLALAGVTLTGTIIGLCVTTPLFIIFSXXXXXXXXXXXXXVTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKRVAGIADYVGQKTKEVGQDIQSKVHEAGGKTG 712
            PSAS+ L V  + PLGG  L L+G+ L  +++GL V TP+F+IFS             V GFLTSGA GL  LSSL+++ +  RQ     P+  +QA++R+A  A + G KT + G  IQ +  +AG   G
Sbjct:   31 PSASQALTVATLFPLGGLLLVLSGLALAASVVGLAVATPVFLIFSPVLVPAALLIGLAVAGFLTSGALGLGGLSSLTFLANTARQAFQRTPDYVEQARRRMAEAAAHAGHKTAQAGHAIQGRADQAGTGAG 161          
BLAST of CX047540 vs. ExPASy Swiss-Prot
Match: OLEO1_PRUDU (Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 39/117 (33.33%), Postives = 61/117 (52.14%), Query Frame = -2
Query:  362 PSASKVLAVLAMLPLGGTFLALAGVTLTGTIIGLCVTTPLFIIFSXXXXXXXXXXXXXVTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKRVAGIADYVGQKTKEVGQ 712
            P + +V      +  GG+ L L+G+ L GT+I L + TPL +IFS               GFLTSG FG+ A++ LSW+   +  K     +  DQA+ ++AG A  +  + ++ GQ
Sbjct:   21 PRSYQVAKAATAVTAGGSLLVLSGLVLAGTVIALTIATPLLVIFSPVLVPALITVALITMGFLTSGGFGVAAVTVLSWIYKYVTGKQPPGADQLDQARHKLAGKARDIKDRAEQFGQ 137          
BLAST of CX047540 vs. ExPASy Swiss-Prot
Match: OLEO3_ARATH (Oleosin 14.9 kDa OS=Arabidopsis thaliana GN=OL3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = -2
Query:  410 PSASKVLAVLAMLPLGGTFLALAGVTLTGTIIGLCVTTPLFIIFSXXXXXXXXXXXXXVTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKRV 712
            P A +++     +  GG+ L L+G+TL GT+I L V TPL +IFS             +TGFL SG FG+ A+++ SW   + R  TGS  +  + A+ +V
Sbjct:   22 PKARQMVKAATAVTAGGSLLVLSGLTLAGTVIALTVATPLLVIFSPVLVPAVVTVALIITGFLASGGFGIAAITAFSW---LYRHMTGSGSDKIENARMKV 119          
BLAST of CX047540 vs. ExPASy Swiss-Prot
Match: OLEO1_MAIZE (Oleosin Zm-I OS=Zea mays GN=OLE16 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 39/113 (34.51%), Postives = 55/113 (48.67%), Query Frame = -2
Query:  329 GGTFLALAGVTLTGTIIGLCVTTPLFIIFSXXXXXXXXXXXXXVTGFLTSGAFGLTALSSLSWVLSILRQKTGSVPEMADQAKKRVAGIADYVGQKTKEVGQDIQSKVHEAGG 667
            GG+ L L+G+ L GT+I L V TP+ +IFS               GF+TSG  G+ ALS  SW+   L  K     +  D AK R+A        K ++V    Q ++ +A G
Sbjct:   50 GGSMLVLSGLILAGTVIALTVATPVLVIFSPVLVPAAIALALMAAGFVTSGGLGVAALSVFSWMYKYLTGKHPPAADQLDHAKARLA-------SKARDVKDAAQHRIDQAQG 155          
The following BLAST results are available for this feature:
BLAST of CX047540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
OLEO3_MAIZE3.883e-2242.97Oleosin Zm-II OS=Zea mays GN=OLE18 PE=1 SV=1[more]
OLEO2_ORYSJ1.475e-2141.22Oleosin 18 kDa OS=Oryza sativa subsp. japonica GN=... [more]
OLEO2_ORYSI1.475e-2141.22Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OL... [more]
OLEO1_PRUDU2.523e-1333.33Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1[more]
OLEO3_ARATH4.757e-1236.63Oleosin 14.9 kDa OS=Arabidopsis thaliana GN=OL3 PE... [more]
OLEO1_MAIZE5.260e-1134.51Oleosin Zm-I OS=Zea mays GN=OLE16 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14G05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14G05-N9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047540 ID=CX047540; Name=CX047540; organism=Citrus sinensis; type=EST; length=728bp
TTTTTTTTTTTTTTTTTAGCGATTGCAAATTTGAACTAAATTAGCAAATG
GAAGATACAAGACAACAACTGAGACAACACATAGCATATTCAAATTCTAG
ATAATTAAACCCAAAAACAAAAGCACCAAATGCCTTGCATTCCAAGTAAG
CCCAAGAGCCAAACCCTTGCACCTCACAAGCCACAACAGAGGACGGACTC
TCCTACGACTGAATACACAAAACTTATTACAACTACAAAACCAACACTAA
AGCCCTAAAAAGAAACCACACATTGTCTTCCCCATCAACCGATCATATCA
GATCAACATTTTATGTCCTCCCCGTCTTCCCTCCTGCTTCATGAACCTTA
CTCTGAATATCCTGCCCAACTTCCTTAGTCTTCTGGCCCACATAATCCGC
TATTCCCGCCACCCGCTTCTTCGCCTGGTCCGCCATCTCCGGCACCGACC
CAGTCTTCTGCCGCAATATGCTCAGGACCCACGAGAGCGAAGACAAGGCC
GTCAGCCCGAAAGCCCCCGACGTTAAAAACCCAGTCACTGCAAGAGCAAG
AACAATGGCTGCCGGGACAATAACGGGGCTGAAGATTATGAAAAGAGGAG
TGGTGACGCAAAGCCCGATGATGGTTCCAGTCAGCGTGACACCGGCAAGA
GCAAGAAAGGTTCCACCGAGGGGCAGCATGGCCAAAACTGCAAGAACTTT
GCTTGCTGAAGGGCCTCCTGCTGCTGCT
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