CX047536

Overview
NameCX047536
Unique NameCX047536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: STIP1_CRIGR (Stress-induced-phosphoprotein 1 OS=Cricetulus griseus GN=STIP1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11
Identity = 37/114 (32.46%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  198 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 539
            +G+E F++ DY  A+  YT+AI  +P DA L SNR+ C+ +L + + AL D + C  L P + K   R+ AAL  ++ + +A + + + + LD   KE    ++  + A    H
Sbjct:  366 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALELDSSCKEAADGYQRCMMAQYNRH 479          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: SGTB_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11
Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = -2
Query:  252 KAPMKELPEVRPEIXXXXXXXXARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 608
            K  ++ L    PE           G+   K+++Y  AVD YTQAI+ DP++A    NR+    +L     A+ D +   A+   + KA  R G AL  + KF+EA  ++ + + LDPEN
Sbjct:   68 KNDIRPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPEN 186          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: SGTB_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11
Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = -2
Query:  252 KAPMKELPEVRPEIXXXXXXXXARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 608
            K  ++ L    PE           G+   K+++Y  AVD YTQAI+ DP++A    NR+    +L     A+ D +   A+   + KA  R G AL  + KF+EA  ++ + + LDPEN
Sbjct:   68 KNDIRPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPEN 186          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: STIP1_RAT (Stress-induced-phosphoprotein 1 OS=Rattus norvegicus GN=Stip1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 37/114 (32.46%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  198 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 539
            +G+E F++ DY  A+  YT+AI  +P DA L SNR+ C+ +L + + AL D + C  L P + K   R+ AAL  ++ + +A + + + + LD   KE    ++  + A    H
Sbjct:  366 KGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRH 479          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: STIP1_MOUSE (Stress-induced-phosphoprotein 1 OS=Mus musculus GN=Stip1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 37/114 (32.46%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  198 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH 539
            +G+E F++ DY  A+  YT+AI  +P DA L SNR+ C+ +L + + AL D + C  L P + K   R+ AAL  ++ + +A + + + + LD   KE    ++  + A    H
Sbjct:  366 KGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRH 479          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11
Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = -2
Query:  249 RGDEAFKQKDYLMAVDAYTQAIDFDPS-DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 539
            RGD++F++KD+  A+D Y+Q ID       T+   RSLC++   Q + AL DA   + + PDWP A Y +  AL  L    +AA+   E   L+ + +
Sbjct:  409 RGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLNEAAQLEEKRQ 506          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: TTC3_HUMAN (Tetratricopeptide repeat protein 3 OS=Homo sapiens GN=TTC3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = -2
Query:  240 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTL---DPEN-KELV 539
            +G+E F ++ + +A+  YT+AI++ P +  L  NR+LC++R GQ  +AL D K    L+  WPK  YR   AL +L ++D A  A  +   L   DPE  K+L+
Sbjct:  237 KGNEEFSKERFDIAIIYYTRAIEYRPENYLLYGNRALCFLRTGQFRNALGDGKRATILKNTWPKGHYRYCDALSMLGEYDWALQANIKAQKLCKNDPEGIKDLI 340          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: STI1L_PLAFA (STI1-like protein (Fragment) OS=Plasmodium falciparum PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.324e-11
Identity = 36/98 (36.73%), Postives = 52/98 (53.06%), Query Frame = -2
Query:  243 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 536
            G++ F++  Y  AV  ++ AI  DP D  L SN S  +  LG+   AL  A  C +++ DWPK   R+G A   L +   A   + EG+ +DP NK L
Sbjct:   14 GNKCFQEGKYEEAVKYFSDAITNDPLDHVLYSNLSGAFASLGRFYEALESANKCISIKKDWPKGYIRKGCAEHGLRQLSNAEKTYLEGLKIDPNNKSL 111          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: STI1L_PLAF7 (STI1-like protein OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0324 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.324e-11
Identity = 36/98 (36.73%), Postives = 52/98 (53.06%), Query Frame = -2
Query:  243 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 536
            G++ F++  Y  AV  ++ AI  DP D  L SN S  +  LG+   AL  A  C +++ DWPK   R+G A   L +   A   + EG+ +DP NK L
Sbjct:   14 GNKCFQEGKYEEAVKYFSDAITNDPLDHVLYSNLSGAFASLGRFYEALESANKCISIKKDWPKGYIRKGCAEHGLRQLSNAEKTYLEGLKIDPNNKSL 111          
BLAST of CX047536 vs. ExPASy Swiss-Prot
Match: TTC25_DANRE (Tetratricopeptide repeat protein 25 OS=Danio rerio GN=ttc25 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 35/108 (32.41%), Postives = 63/108 (58.33%), Query Frame = -2
Query:  213 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 536
            GD+ F++ +Y+ AV+++T A+   P +   L +RS C+++LG AE+AL DA++      ++ K  Y++  AL  +  F+ A   ++ G  L PE +E     ++A EA
Sbjct:   21 GDQLFQRGEYVKAVESFTTALTLQPDNKNCLVSRSRCYVKLGDAENALKDAESSLKDNKNYFKGLYQKAEALYTMGDFEFALVYYHRGHKLRPELQEFRLGIQKAQEA 128          
The following BLAST results are available for this feature:
BLAST of CX047536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
STIP1_CRIGR1.138e-1132.46Stress-induced-phosphoprotein 1 OS=Cricetulus gris... [more]
SGTB_RAT1.138e-1132.77Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTB_MOUSE1.138e-1132.77Small glutamine-rich tetratricopeptide repeat-cont... [more]
STIP1_RAT1.486e-1132.46Stress-induced-phosphoprotein 1 OS=Rattus norvegic... [more]
STIP1_MOUSE1.486e-1132.46Stress-induced-phosphoprotein 1 OS=Mus musculus GN... [more]
Y4523_ARATH3.311e-1135.71Probable serine/threonine-protein kinase At4g35230... [more]
TTC3_HUMAN3.311e-1137.50Tetratricopeptide repeat protein 3 OS=Homo sapiens... [more]
STI1L_PLAFA4.324e-1136.73STI1-like protein (Fragment) OS=Plasmodium falcipa... [more]
STI1L_PLAF74.324e-1136.73STI1-like protein OS=Plasmodium falciparum (isolat... [more]
TTC25_DANRE7.375e-1132.41Tetratricopeptide repeat protein 25 OS=Danio rerio... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14G03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14G03-N5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047536 ID=CX047536; Name=CX047536; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTTTTCAAAACAGCTGTTAATAGCATCTTAAAATATGGGTTCTATC
CATACTCCCACCCGAATCATTTCTTGCGGCATGACTCAAAAATAACAATA
AGCCTGTCGCACCGATAACTCATTAGTGCAAGTGGTTTTTTGGTTTCTTG
TCTCCGTATTTTGGAATTGGAACAAACTATTACTTCTTGTCTGTCCCATG
AAACTTCCTCCCAGCTTCAACGGCCTCCCTAAAAGCAAATACAAGCTCCT
TATTCTCAGGATCAAGCGTCACGCCCTCATAAAAAGCATTGGCTGCCTCA
TCAAATTTCTCCAATAAACGCAATGCTGCACCCTCCCGATAGCAAGCTTT
CGGCCAGTCCGGTCTTAATGCTCTACAAGCCTTTGCATCGGCTAAGGCAT
GCTCTGCTTGTCCAAGACGTATCCAACAAAGGCTTCTGTTGGAAAGTAAT
GTGGCATCGCTGGGGTCGAAATCAATTGCTTGTGTATATGCATCAACAGC
CATAAGATAATCCTTTTGTTTGAAAGCCTCATCTCCTCTTGCTTTTGCTT
CTGCAGCTTTCTTCTTTATTTCAGGCCGCACCTCAGGGAGCTCCTTCATT
GGAGCCTTGTCTTTTGGTGCATTATTTTCCTTCAGGTTTCTTGTTTCTTC
CAATTGTTTCCCCGATTCAGATTGCATGTATTCAAGAATTCCGTCAACCG
TCCATTTGGGAATGGAGGGATCTTCTGATGTCAAGGGAAAAAGGATCTCA
ACAGCCTCACGATTGCCTCTTGCAGCTGCAACTTGTATGGGTTTCTGGCC
ATCCTCATCGGTGACATTGGAATCAGCTCCAGCTTTCAATAAGCATTTTA
TGATTTCTGTACTCCCAATATCAGCAGCGATGTGCAATGGGGTT
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