CX047444

Overview
NameCX047444
Unique NameCX047444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047444 vs. ExPASy Swiss-Prot
Match: RU2B_SCHPO (Probable U2 small nuclear ribonucleoprotein B'' OS=Schizosaccharomyces pombe GN=SPBC8D2.09c PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14
Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = 2 
Query:  125 SLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAK 328
            +LY LFS YG + D+VALKTPK+RGQA VVF + +AA+ A++ ++NF F+ K M+IQYA SKS  + +
Sbjct:   23 ALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKIQYAHSKSKIIER 90
The following BLAST results are available for this feature:
BLAST of CX047444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RU2B_SCHPO6.969e-1454.41Probable U2 small nuclear ribonucleoprotein B'' OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14C01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14C01-F1-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047444 ID=CX047444; Name=CX047444; organism=Citrus sinensis; type=EST; length=882bp
GGTTTCTGATTGAGCTGAAGAGCTTCAATTGATAGTCACCATGATTACTG
GAGATATACCTCCTAATCAAACGATTTACATTAAAAATCTCAATGAAAAG
ATCAAGAAAGAAGAATTAAAGAGGTCCCTTTATTGTTTATTCTCACAATA
TGGGAGGATTTTCGATGTTGTGGCCTTGAAGACGCCCAAGCTTCGAGGAC
AAGCATGGGTTGTGTTTAGCGAAGTGACAGCTGCCAGTAATGCAGTGCGG
CAAATGCAGAATTTTCCATTTTATGATAAGCCTATGCGTATACAATATGC
TAAGTCAAAGTCAGATTGCGTTGCTAAAGAAGATGGAAGCTTCGTTCCAA
GAGAAAAGAAGAAAAAGCAAGAAGAGAAAGCTGAACGAAAGAGGCGTGCT
GAAGAAGCACAGCAATCTTCTATGGCTAATGGAACAGGTGCTCAAAGCAA
TGGTGGCACAGCTGCCTCTTTTCGAAATGCAAATACACAAGAAACTGCTG
CTCCAAATAATATACTGTTCATACAGAATTTGCCCCACGAAACCACCAGC
TCAATGCTTGAAATGCTCTTCCAGCAATATCCAGGATTTAAGGAAGTTCG
AATGATTGAAGCAAAGCCAGGCATTGCCTTTGTAGAATTTGAAGATGATG
TGCAGTCATCCATGGCCATGCAGGCCCTTCAGGGTTTCAAAATCACCCCA
CAGAATCCGATGGCTATCACTTTCGCCAAGAAATGATCAACCCTTTTCTT
CTGTATTCTTAATTTCTTGCTTTATCTGATTGCCTTGGATGCGCCGAGAA
TATGTAATAGTCGAAGAGTACTCGCAAAATACTGTAGTCATGTAGAGCTT
CGAGCTAATTTGGTGAAATACAGATCCAGTTC
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