CX047432

Overview
NameCX047432
Unique NameCX047432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047432 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.433e-50
Identity = 105/166 (63.25%), Postives = 123/166 (74.10%), Query Frame = -2
Query:  269 MSLIPSFFGNRR---SSVFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVE-EARKANVKAIEISG 754
            MSLIPSFFGN R   +++FDPFSLDVWDPF++   PS  SSA++           NARVDWKET EAH FKADLPG+             VL+ISG+R +E+E+K DTWHR ERSSG FSR+FRLPENVKMDQ+KASMENGVLTVTVPKVE   +KA VK+I+ISG
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSSSAIA-----------NARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVTVPKVETNKKKAQVKSIDISG 155          
BLAST of CX047432 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.444e-50
Identity = 100/162 (61.73%), Postives = 121/162 (74.69%), Query Frame = -2
Query:  269 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 754
            MS+IPSFFG+RRS+V +PFSLD+WDPF+D+PL +  SS  SS+F  ET+A  N  +DWKETP+AH FKADLPGL             VLQISG+R  E+E+KN+ WHR E SSG F RRFRLPEN  +D++KA MENGVLTVTVPKV E +K  VK+I ISG
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLIT--SSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKV-EMKKPEVKSIHISG 159          
BLAST of CX047432 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.213e-49
Identity = 106/163 (65.03%), Postives = 121/163 (74.23%), Query Frame = -2
Query:  269 MSLIPSFFGNRRS-SVFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 754
            MSLIP  FG+RRS SVFDPFS+DV+DPF++     G++ + S     ETSA  N R+DWKETPEAH FKADLPGL             VLQISG+R +E+EDKNDTWHR ERSSG F RRFRLPEN KMDQ+KASMENGVLTVTVPK EE    +VK+IEISG
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPFKEL----GFTVSNSG----ETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPK-EEVNNPDVKSIEISG 154          
BLAST of CX047432 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.584e-49
Identity = 104/163 (63.80%), Postives = 117/163 (71.78%), Query Frame = -2
Query:  269 MSLIPSFFGNRRSS-VFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 754
            MSLIP  FG+RRSS +FDPFS+DV+DPFR+   PS  S         E+SA  N R+DWKETPE H FK DLPGL             VLQISG+R +E+EDKND WHR ERSSG F RRFRLPEN KMDQ+KASMENGVLTVTVPK EE +K  VK+IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNSG--------ESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPK-EEVKKPEVKSIEISG 154          
BLAST of CX047432 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.702e-49
Identity = 101/162 (62.35%), Postives = 121/162 (74.69%), Query Frame = -2
Query:  269 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 754
            MSLIPS FG RR++VFDPFSLDV+DPF  F  PSG ++A +     + +A  NA+VDW+ETPEAH FKADLPGL             +LQISG+R  E E+KND WHR ERSSG F+RRFRLPEN KM++IKASMENGVL+VTVPKV E +K  VK+I+ISG
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAM----DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPE-KKPEVKSIDISG 157          
BLAST of CX047432 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.529e-49
Identity = 105/163 (64.42%), Postives = 118/163 (72.39%), Query Frame = -2
Query:  269 MSLIPSFFGNRRSS-VFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 754
            MSLIP  FG+RRSS +FDPFS+DV+DPFR+   P   S         ETSA  N R+DWKETPEAH FKADLPGL             VLQISG+R +E+EDKND W R ERSSG F RRFRLPEN KMDQ+KASMENGVLTVTVPK EE +K +VK+IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPGTNSG--------ETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPK-EEMKKPDVKSIEISG 154          
BLAST of CX047432 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.019e-49
Identity = 98/162 (60.49%), Postives = 119/162 (73.46%), Query Frame = -2
Query:  269 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 754
            MS+IPSFF ++RS++FDPFSLD WDPF+           +S++   ET+A+VNAR+DWKETPEAH  KADLPG+             VLQISG+R  E+E+K+DTWHR ERSSG F RRFRLPEN KMD++KA MENGVLTV VPK EE +K  VKAI+ISG
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGI---------ISTEPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTVVVPKEEEEKKPMVKAIDISG 153          
BLAST of CX047432 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.751e-48
Identity = 97/162 (59.88%), Postives = 122/162 (75.31%), Query Frame = -2
Query:  269 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 754
            MSL+PSFFG RR++VFDPFSLDVWDPF  F  P G ++A +     + +A  NA+VDW+ETPEAH FKAD+PGL             +LQISG+R  E E+K+DTWHR ERSSG F RRFRLPEN K++++KASMENGVL+VTVPKV+E+ K  VK+++ISG
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTP-GLTNAPAK----DVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQES-KPEVKSVDISG 156          
BLAST of CX047432 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.987e-48
Identity = 98/145 (67.59%), Postives = 109/145 (75.17%), Query Frame = -2
Query:  272 DPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEIS 706
            DPFSLDVWDPF+DFP  +   SA  S FP E SA V+ R+DWKETPEAH FKADLPGL             VLQISG+R +E+EDKND WHR ERSSG F RRFRLPEN KMDQ+KA+MENGVLTVTVPK EE +K  VK+IEIS
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSA--SSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPK-EEIKKPEVKSIEIS 142          
BLAST of CX047432 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.096e-48
Identity = 99/162 (61.11%), Postives = 116/162 (71.60%), Query Frame = -2
Query:  269 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDFPLPSGYSSAVSSQFPPETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEISG 754
            MSLIPS FG RRS+VFDPFS D+WDPF  F  PS  S+  ++    + +A  NARVDWKETPEAH FKADLPGL             VLQISG+R  E E+KND WHR ER+SG F RRFRLPEN KM+++KA+MENGVLTV VPK  E +K  VK+I+ISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPS--SALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPE-KKPQVKSIDISG 159          
The following BLAST results are available for this feature:
BLAST of CX047432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HS17A_ARATH1.433e-5063.2517.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP12_DAUCA5.444e-5061.7318.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP12_SOLPE1.213e-4965.0317.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLLC1.584e-4963.8017.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS17C_ARATH2.702e-4962.3517.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_SOLPE3.529e-4964.4217.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_HELAN6.019e-4960.4917.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP17_ARATH1.751e-4859.8817.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_MEDSA2.987e-4867.5918.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS181_ARATH5.096e-4861.1118.1 kDa class I heat shock protein OS=Arabidopsis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_14B07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14B07-D13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047432 ID=CX047432; Name=CX047432; organism=Citrus sinensis; type=EST; length=824bp
TGCGATATGAATTTATAACTTTAGCTTTCACTCTATTAACTTCAACTCTT
TTTATTTATTTATTTTTTAAATTCTAAAGAGCACGAATACATTGTAAACA
AGATCAAATGACGCGCAGGGTTACAAAATTACATATCCCATTACAAGACA
CACAAAAATGGTAGGCGTCACATAAGACAACACTCAACTAAAAGTAATGA
ACCACAGACTCACTCGGGATTCAACACAAATTTTAAATCATCTTCGTTTA
TTAAATATCAATTTATCAGCCAGAAATTTCAATAGCCTTGACATTGGCTT
TCCTGGCCTCCTCCACCTTAGGGACTGTAACAGTGAGCACACCATTCTCC
ATGGAAGCCTTAATCTGATCCATCTTCACATTCTCGGGCAGCCTGAACCT
CCTGGAGAACATGCCGCTGCTGCGCTCCCAGCGATGCCACGTGTCGTTCT
TGTCTTCCCTCTCGATCCCCCTCTGCCCGCTTATCTGAAGCACCCTGTCG
TCCTCGACCTCGACCTTCACTTCCTCTTTCCTCAGCCCCGGAAGATCGGC
CTTGAACGCGTGGGCTTCCGGGGTTTCCTTCCAGTCCACGCGGGCGTTAA
CGACAGCAGAGGTTTCTGGAGGGAACTGAGACGACACCGCAGACGAATAG
CCAGACGGCAAAGGGAAGTCCCTGAATGGATCCCAAACGTCGAGCGAGAA
TGGATCGAACACACTGCTGCGTCGGTTGCCGAAGAAGCTTGGAATTAGCG
ACATTTTCTAGTTTTCTTTTCGGTTAAGAACTAATGGAAAAGTGGCTGTT
GCAGAATGTAGGATATGTAAACCT
back to top