CX047417
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_PICTO (30S ribosomal protein S12P OS=Picrophilus torridus GN=rps12p PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38 Identity = 76/136 (55.88%), Postives = 103/136 (75.74%), Query Frame = -2 Query: 215 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 616 G+ AG+KL R+ RW+D+ YK+ L + K P G+ AKGIV+EK+GIEAKQPNS IRKC ++QLIKNG++++AF P DG +NYI+E+DEV++ G GR G + GDIPGVR+KV+KV+G+SL L K +KEK Sbjct: 4 GLNAGKKLMKSRKTYRWSDRDYKRRVLNLKKKSDPLEGAPQAKGIVIEKVGIEAKQPNSGIRKCVKIQLIKNGRQLSAFAPGDGAINYIDEHDEVVVEGIGGRMGRSKGDIPGVRYKVIKVNGISLHELVKGRKEK 139
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_PYRIL (30S ribosomal protein S12P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps12p PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.032e-37 Identity = 79/137 (57.66%), Postives = 105/137 (76.64%), Query Frame = -2 Query: 212 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 616 G+ AG KLK R+R +W D +YK+ LG K P G+ A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I G +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP Sbjct: 9 GLFAGGKLKRKRKRFKWNDITYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVIIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_PYRCJ (30S ribosomal protein S12P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps12p PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.032e-37 Identity = 80/137 (58.39%), Postives = 105/137 (76.64%), Query Frame = -2 Query: 212 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 616 G+ AG KLK R++ RW D +YK+ LG K P G+ A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I G +G ++GDIPGVRFKVVKV+GVSL A+++ KK+KP Sbjct: 9 GLFAGGKLKKKRQKFRWNDVTYKRRMLGLAEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPYDGGLNYINEHDEVIIERIGGPEGKSLGDIPGVRFKVVKVNGVSLWAIWRGKKQKP 145
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_PYRAE (30S ribosomal protein S12P OS=Pyrobaculum aerophilum GN=rps12p PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.348e-37 Identity = 79/137 (57.66%), Postives = 105/137 (76.64%), Query Frame = -2 Query: 212 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 616 G+ AG KLK R++ RW D +YK+ LG K P G+ A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I G +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP Sbjct: 9 GLFAGGKLKRKRQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_PYRAR (30S ribosomal protein S12P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps12p PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.761e-37 Identity = 79/137 (57.66%), Postives = 104/137 (75.91%), Query Frame = -2 Query: 212 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 616 G+ AG KLK R+R +W D +YK+ LG K P G+ A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I G +G ++GDIPGVRFKV+KV+GVSL A++ KK+KP Sbjct: 9 GLFAGGKLKRKRKRFKWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWSGKKQKP 145
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_METKA (30S ribosomal protein S12P OS=Methanopyrus kandleri GN=rps12p PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.761e-37 Identity = 81/137 (59.12%), Postives = 101/137 (73.72%), Query Frame = -2 Query: 212 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 616 G A RKL+ R++ RW D+ YK+ L +E P G+ A+GIVLEK+G+EAKQPNSAIRKC RVQLIKNGK++ AF P DG ++YI+E+DEV+I G G KG A GDIPGVR+KVVKV+ V+L L K K EKP Sbjct: 9 GEFAARKLREKRKKFRWKDERYKRRMLKLDEKADPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAIDYIDEHDEVVIEGIGGPKGRAKGDIPGVRYKVVKVNDVALSELLKGKIEKP 145
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_THEVO (30S ribosomal protein S12P OS=Thermoplasma volcanium GN=rps12p PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.003e-37 Identity = 78/136 (57.35%), Postives = 101/136 (74.26%), Query Frame = -2 Query: 215 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 616 G+ AGRKL +R++ RW+D+ YK+ L + K P G+ AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++I AF DG +NYI+E+DEV + G GR G + GDIPGVR+KVV V+G+SL L K +KEK Sbjct: 4 GLNAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKELVKGRKEK 139
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.922e-37 Identity = 82/138 (59.42%), Postives = 101/138 (73.19%), Query Frame = -2 Query: 209 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 616 G AGRKLK R++ RW+D YK+ L E P G+ AKGIVLEKI +EAKQPNSA+RK RVQLIKNGK + AF P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQAKGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_THEAC (30S ribosomal protein S12P OS=Thermoplasma acidophilum GN=rps12p PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.922e-37 Identity = 78/136 (57.35%), Postives = 101/136 (74.26%), Query Frame = -2 Query: 215 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 616 G+ AGRKL +R++ RW+D+ YK+ L + K P G+ AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++I AF DG +NYI+E+DEV + G GR G + GDIPGVR+KVV V+G+SL L K +KEK Sbjct: 4 GINAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKELVKGRKEK 139
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 5.122e-37 Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = -2 Query: 212 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSS-HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 616 G+ + L R+ +R AD +Y+K LG ++K G + AK IVLEKIG+EAKQPNSAIRK R QLI GKKI AFVP DG + YIE NDEV + GFG+KG +VGDIPG+RFKV KV VSL A+F KKEKP Sbjct: 3 GLFSANNLIKSRKAKRLADTAYRKRALGTKYKHSVLGRAPQAKAIVLEKIGVEAKQPNSAIRKAVRCQLIATGKKITAFVPYDGSVTYIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIFTGKKEKP 138 The following BLAST results are available for this feature:
BLAST of CX047417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047417 ID=CX047417; Name=CX047417; organism=Citrus sinensis; type=EST; length=692bpback to top |