CX047417
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.065e-30 Identity = 70/137 (51.09%), Postives = 91/137 (66.42%), Query Frame = -2 Query: 215 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 619 +G AGRKL RR RW Y L + K P G+ +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P + +N+I+E+DEV+I G G G A GDIPGVR+KVV V S+ L + ++EK Sbjct: 8 KGEFAGRKLLLKRRASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_METLZ (30S ribosomal protein S12P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps12p PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.065e-30 Identity = 71/139 (51.08%), Postives = 92/139 (66.19%), Query Frame = -2 Query: 209 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 619 +G A R L ++ RW+D Y + L + K P G+ + IVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF DG +N+I+E+DEV I G GR G ++GDIPGVRF V V+GVSL L + EK R Sbjct: 3 QGKFAARNLVRTAKKFRWSDSVYSRRALKLKLKADPLEGAPIGRAIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVTICGIGGRAGRSMGDIPGVRFVVSGVNGVSLNELVIGRAEKAR 141
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29 Identity = 69/137 (50.36%), Postives = 91/137 (66.42%), Query Frame = -2 Query: 215 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 619 +G AGRKL R+ RW Y L + K P G+ +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P + +N+I+E+DEV+I G G G A GDIPGVR+KVV V S+ L + ++EK Sbjct: 8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVLVGKNSIRELVRGRQEK 144
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29 Identity = 69/137 (50.36%), Postives = 91/137 (66.42%), Query Frame = -2 Query: 215 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 619 +G AGRKL R+ RW Y L + K P G+ +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P + +N+I+E+DEV+I G G G A GDIPGVR+KVV V S+ L + ++EK Sbjct: 8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29 Identity = 70/138 (50.72%), Postives = 95/138 (68.84%), Query Frame = -2 Query: 215 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG--RKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 619 RG AGRKL+ R+ RW D +Y + L + K P G+ A+GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+ + AF P + +N+I+E+DEV+I G G + A GDIPGV++KV+ V SL L + ++EK Sbjct: 8 RGEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVIMVGRNSLRELVRGRQEK 145
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.305e-29 Identity = 68/137 (49.64%), Postives = 91/137 (66.42%), Query Frame = -2 Query: 215 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 619 +G AGRKL R+ RW Y LG + K P G+ +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P + +N+I+E+DEV+I G G G A GDIPGVR+KV+ V S+ L + ++EK Sbjct: 8 KGEFAGRKLLLKRKATRWQHYKYVNRELGLKVKADPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVLMVGKNSIRELVRGRQEK 144
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_META3 (30S ribosomal protein S12P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps12p PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 3.931e-29 Identity = 68/139 (48.92%), Postives = 90/139 (64.75%), Query Frame = -2 Query: 209 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 619 +G AGRK+ R+ RW Y L E P G+ +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P + +N+I+E+DEV+I G G G A GDIPGVRF+VV V S+ L + ++EK R Sbjct: 8 KGEFAGRKIVLKRKESRWHHYKYVNKALKLKEKSDPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRFRVVMVGKNSMRELVRGRQEKVR 146
BLAST of CX047417 vs. ExPASy Swiss-Prot
Match: RS12_NANEQ (30S ribosomal protein S12P OS=Nanoarchaeum equitans GN=rps12p PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.265e-27 Identity = 71/138 (51.45%), Postives = 88/138 (63.77%), Query Frame = -2 Query: 209 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 616 G+ AGRKLK R++ RW D Y + L + K P G+ A GIVLEK +E +QPNS K RVQL KNGK + AF P DG + I+E+DEVLI G GR+G ++GDIPGVR+KV V+G L L K K EK R Sbjct: 5 GLFAGRKLKKIRKKFRWNDYRYVRRMLRIKEKYDPLEGAPMASGIVLEKTDVERRQPNSGRIKVVRVQLKKNGKVVTAFTPGDGAIKVIDEHDEVLIVGIRGRQGRSMGDIPGVRYKVYLVNGQPLELLRKGKIEKAR 142 The following BLAST results are available for this feature:
BLAST of CX047417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047417 ID=CX047417; Name=CX047417; organism=Citrus sinensis; type=EST; length=692bpback to top |