CX047406

Overview
NameCX047406
Unique NameCX047406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 42/76 (55.26%), Postives = 59/76 (77.63%), Query Frame = -3
Query:  427 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 654
            + F+GGL+W T D+SL +AF+ +GD++++K+I DRETGRSRGFGFV F DE +   AI  M+G+ L+GR+I VN A
Sbjct:   36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111          
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = -3
Query:  424 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 672
            S D   R +VG L+W   D +L E FS  G+++++K++ DR++GRSRGFGFVT+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284          
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = -3
Query:  424 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 672
            S D   R +VG L+W   D +L E FS  G+++++K++ DR++GRSRGFGFVT+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285          
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  424 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 657
            +R +VG + W   D+ L + FS +G ++ ++++ DRETGRSRGFGFVT   E  M DAI  ++GQ+LDGR I VN A+
Sbjct:  230 YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307          
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  424 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 657
            FR +VG L W   +  L + FS +G ++E++++ DRETGRSRGFGFVT  D   + +AI  ++GQNL+GR I VN A+
Sbjct:  244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321          
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = -3
Query:  427 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 660
            E + FVGGL + TT+ SL + FS YG + E  ++ DRE+ RSRGFGFVTF + +  +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  427 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 669
            A  E + FVGGL++ T + SL + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  427 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 669
            A  E + FVGGL++ T + SL + FS YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = -3
Query:  424 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 654
            R +VG L W    S L + FS +G ++ +++++DRETGRSRGFGFVT   E  + DAI  ++GQ LDGR + VN A+
Sbjct:  150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226          
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = -3
Query:  424 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 657
            +R +VG + W   D+ L + FS +G ++ ++++ DRE+GRSRGFGFVT   E  M +AI  ++GQ LDGR I VN A+
Sbjct:  191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268          
The following BLAST results are available for this feature:
BLAST of CX047406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
GRP2_ARATH7.935e-1955.26Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
ROC2_NICSY2.553e-1746.9929 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL4.354e-1746.9931 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY7.427e-1748.7231 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH2.161e-1648.7231 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
CIRBP_XENTR2.822e-1650.00Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
CIRBP_PONAB4.814e-1650.62Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN4.814e-1650.62Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
ROC1_SPIOL8.212e-1648.0528 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_NICSY1.072e-1546.1528 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14A04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A04-B7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047406 ID=CX047406; Name=CX047406; organism=Citrus sinensis; type=EST; length=680bp
TTTTTTTGAAAAGAACTGTAATTCATTTCATTTTTTTTTTCAAACAATTA
ACCAAACAGGGAGAACGAAACAACACAGGATAACAGGAACCGATCAAAAC
GACACATCATAACCCAAGGAAAATATCAAAACACGGAACGGTAACATTCA
ACTCCTAATTTATCCTACAAAACCCTAGTTCCTCCAGCTACCGCCATCAG
AAGCACCGCTCCTTGAGTATCGGGAACCACCATCACCGCCATATCCACCG
TCACGGCTGTAACCACCTTCACGGCGGCCACCATATCCACCGCCGCCACC
TCCGTATCCGCGGCTCCCACCGTATCCACCGCCACCACCACTTTCACGGC
GTCCACCACCTCCATATCCACCACCGCCACGGCTTCCGTAACCGCCACCG
CCACCGCCACCGCTTCCACGGGACTGGGCCTCGTTGACTGTTATGTTACG
GCCGTCCAGATTCTGGCCGTTCATGCCTTCGATTGCGTCCCTCATCGACT
TCTCATCGCGGAAGGTAACGAATCCAAATCCTCTGGATCTTCCAGTCTCG
CGATCGTTAATAATCTTCGATTCAAGGATATCGCCGTAAGCACTGAAGGC
CTCATGGAGAGAGCTGTCAGTGGTGGCCCAGGCCAGGCCGCCTACGAAGC
ACCGAAACTCGACATCGGCTGAAGCCATTA
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