CX047406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19 Identity = 42/76 (55.26%), Postives = 59/76 (77.63%), Query Frame = -3 Query: 427 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 654 + F+GGL+W T D+SL +AF+ +GD++++K+I DRETGRSRGFGFV F DE + AI M+G+ L+GR+I VN A Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17 Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = -3 Query: 424 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 672 S D R +VG L+W D +L E FS G+++++K++ DR++GRSRGFGFVT+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17 Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = -3 Query: 424 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 672 S D R +VG L+W D +L E FS G+++++K++ DR++GRSRGFGFVT+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17 Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = -3 Query: 424 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 657 +R +VG + W D+ L + FS +G ++ ++++ DRETGRSRGFGFVT E M DAI ++GQ+LDGR I VN A+ Sbjct: 230 YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16 Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = -3 Query: 424 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 657 FR +VG L W + L + FS +G ++E++++ DRETGRSRGFGFVT D + +AI ++GQNL+GR I VN A+ Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16 Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = -3 Query: 427 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 660 E + FVGGL + TT+ SL + FS YG + E ++ DRE+ RSRGFGFVTF + + +DA+ MNG+++DGR I V++A Sbjct: 5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16 Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = -3 Query: 427 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 669 A E + FVGGL++ T + SL + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16 Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = -3 Query: 427 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 669 A E + FVGGL++ T + SL + FS YG I E ++ DRET RSRGFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16 Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = -3 Query: 424 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 654 R +VG L W S L + FS +G ++ +++++DRETGRSRGFGFVT E + DAI ++GQ LDGR + VN A+ Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226
BLAST of CX047406 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15 Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = -3 Query: 424 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 657 +R +VG + W D+ L + FS +G ++ ++++ DRE+GRSRGFGFVT E M +AI ++GQ LDGR I VN A+ Sbjct: 191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268 The following BLAST results are available for this feature:
BLAST of CX047406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047406 ID=CX047406; Name=CX047406; organism=Citrus sinensis; type=EST; length=680bpback to top |