CX047394

Overview
NameCX047394
Unique NameCX047394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB51_SCHPO (Probable cytochrome b5 1 OS=Schizosaccharomyces pombe GN=SPBC29A10.16c PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 33/69 (47.83%), Postives = 51/69 (73.91%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 212
            HN+ KD +++I GKVYDV+ F DDHPGG +++L   G+DAT  ++D+GHS +A  +++E Y+GD+   T
Sbjct:   14 HNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADELLEEMYIGDLKPGT 82          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXXQPHYN-QDKTPEFIIKLLQFLVPLLILGL 329
            +N +   W II   VYDVT FL++HPGG+EVL+   GKDAT+ FEDVGHSS A+ MM ++ VG++               +P +N + KT E  +K   +L+P  +LGL
Sbjct:   17 NNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGEL---VAEERSNVPEKSEPTWNTEQKTEESSMK--SWLMP-FVLGL 119          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_BOVIN (Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            HN+ K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   F +G++
Sbjct:   20 HNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 32/69 (46.38%), Postives = 51/69 (73.91%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 212
            HN  ++ W+II+ KVYDV++F D+HPGGDE+++   G+DAT+ F D+GHS  A  ++   Y+GD+D ++
Sbjct:   13 HNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIGHSDEALRLLKGLYIGDVDKTS 81          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_RABIT (Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            HN  K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   F +G++
Sbjct:   20 HNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_NEUCR (Probable cytochrome b5 OS=Neurospora crassa GN=B23L21.190 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            HN +KD +++I  KVYD+TKF+D+HPGG+EVLL   G+D+T+ FEDVGHS  A+  ++   VG +
Sbjct:   13 HNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVGHSDEAREALEPLLVGTL 77          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 209
            HN  + CW +  GKVYD T +LD+HPGG E +L   G DATD+F  + HSS AKAM+ ++Y+GD+ +S
Sbjct:  508 HNTEESCWFVHGGKVYDATPYLDEHPGGAESILIVAGADATDEFNSI-HSSKAKAMLAQYYIGDLVAS 574          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_RAT (Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            H D K  W+I+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   + +G++
Sbjct:   20 HKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGEL 84          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_MOUSE (Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 200
            H D K  W+I+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   + +G++
Sbjct:   20 HKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGEL 84          
BLAST of CX047394 vs. ExPASy Swiss-Prot
Match: CYB5_CANTR (Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 28/70 (40.00%), Postives = 50/70 (71.43%), Query Frame = 3
Query:    6 HNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTV 215
            H    D W+I+ GKVY+++ ++D+HPGG+EV+L   G DAT+ F+D+GHS  A  ++++ Y+G++  + +
Sbjct:   19 HTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIGHSDEAHEILEKLYIGNLKGAKI 88          
The following BLAST results are available for this feature:
BLAST of CX047394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CYB51_SCHPO6.566e-1647.83Probable cytochrome b5 1 OS=Schizosaccharomyces po... [more]
CYB5_MUSDO8.575e-1643.12Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]
CYB5_BOVIN8.575e-1653.85Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3[more]
CYB5_YEAST1.120e-1546.38Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]
CYB5_RABIT1.120e-1553.85Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE... [more]
CYB5_NEUCR1.120e-1552.31Probable cytochrome b5 OS=Neurospora crassa GN=B23... [more]
NIA_VOLCA3.259e-1551.47Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]
CYB5_RAT4.256e-1550.77Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 S... [more]
CYB5_MOUSE4.256e-1550.77Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2[more]
CYB5_CANTR9.481e-1540.00Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13H08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13H08-O16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047394 ID=CX047394; Name=CX047394; organism=Citrus sinensis; type=EST; length=696bp
CTGGGCACAACGACCGCAAGGACTGTTGGCTTATCATTGAGGGCAAGGTA
TATGATGTGACAAAATTCTTGGATGACCATCCTGGTGGAGACGAGGTATT
GTTGTCTGCCACAGGAAAGGATGCGACTGATGACTTTGAGGATGTTGGTC
ACAGTAGCAGTGCAAAAGCGATGATGGATGAATTCTATGTGGGTGACATT
GATTCATCAACCGTTCCCACCAAGACCAAGTACACCCCTCCCAAGCAGCC
TCACTACAACCAAGACAAGACACCCGAGTTTATTATAAAGCTCCTCCAGT
TCCTAGTTCCTCTGCTAATCTTAGGATTGGCTGTTGGCATCCGCTTCTAT
ACCAAATCCGCTTAATGATACCTTGCAAGATAAAAATACATTTACAATAA
ATCTATATCCGTTGCATTGCACCTTGTTTTTACTAGTTGTTTGGAACTAT
TATCACCAGAAAATGTAGGGTTCTTTATCTTTTGTGATGGCATGTGCTTG
TGTTTGATAAGTGACCATTCACTGCCCGCATGACTTGGAATGCAATGATC
AATTTGCAGTTCCTCGTTTTGGCTTTGCTTTCATTTTTATTCGTATGCAT
CTTCATCTAAAAGAAAGGAAGGAAAGCACCAATTGTCCAAATGGCCTTTG
GGCTTCCTTTCTCCTACATTATTTAAATTTCCTTAATTAAGTGCAA
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