CX047380

Overview
NameCX047380
Unique NameCX047380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 4.038e-45
Identity = 92/180 (51.11%), Postives = 120/180 (66.67%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822
            K WQ  V TWFNQP               +I PRP AGP+RP+V   T++Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI       +   ++++ K+FKA+  LR+ R N R FG R
Sbjct:   16 KDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 8.995e-45
Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822
            K WQ  V TWFNQP               +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   16 KDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.534e-44
Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822
            K WQ  V TWFNQP               +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   16 KDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 179.489 bits (454), Expect = 2.004e-44
Identity = 90/180 (50.00%), Postives = 120/180 (66.67%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822
            K WQ  V TWFNQP               +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MP+       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   16 KDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 2.617e-44
Identity = 92/180 (51.11%), Postives = 119/180 (66.11%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822
            K WQ  V TWFNQP               +I PRP +GPLRPVV   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+  E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   16 KDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.696e-43
Identity = 90/180 (50.00%), Postives = 119/180 (66.11%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822
            K WQ  V TWFNQP               +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP M I       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   16 KDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.138e-39
Identity = 84/180 (46.67%), Postives = 113/180 (62.78%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822
            K WQ +VKTWFNQP                + PRP AGPLRPVV   T++Y+ K+RAGRGFTL E++AAG+    A TIG++VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K   G++  EE   ATQ++GP MP+    P      +T++ K FKAY  LR  R   +  G R
Sbjct:   15 KDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARSIAKLVGIR 193          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.780e-38
Identity = 88/180 (48.89%), Postives = 111/180 (61.67%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822
            K WQ YVKTWFNQP               KI PRP    +RP V   T++YNMK+RAGRGFTLEELKAAG+ +++A TIG+ VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+     A  T V    +PI  E    E   +T++ K+F A+  L  ER   R+ GAR
Sbjct:   16 KDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQE-AVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.391e-37
Identity = 78/168 (46.43%), Postives = 108/168 (64.29%), Query Frame = -1
Query:  319 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLR 822
            K WQ  VKTWFNQP               +I PRP +GPLRP+V+  T +YNMK+R+GRGF+L+E++AAG+  K A TIG++VDHRR+N S+EGLQ NV RLK YKAKL++FP    K +A D+  +E+  ATQ++ P +PI      ++  K T     + A+  +R
Sbjct:   15 KKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182          
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.788e-35
Identity = 79/180 (43.89%), Postives = 110/180 (61.11%), Query Frame = -1
Query:  283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822
            KHW   +KTWF+QP               +I PRP AG LR VV     +YN K R GRGF+L+ELKAAGI +  A TIG++VD RR N++ EGL++N  RLK YKAKL++FP++A   K GDS+ EEL  A Q++G  +P++      E  +VT   +  + +  LR ER ++++ G R
Sbjct:   16 KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRGKR 195          
The following BLAST results are available for this feature:
BLAST of CX047380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CHICK4.038e-4551.1160S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_RAT8.995e-4550.5660S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]
RL13_MOUSE1.534e-4450.5660S ribosomal protein L13 OS=Mus musculus GN=Rpl13... [more]
RL13_HUMAN2.004e-4450.0060S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
RL13_BOVIN2.617e-4451.1160S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]
RL13_CRIGR1.696e-4350.0060S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_SPOFR1.138e-3946.6760S ribosomal protein L13 OS=Spodoptera frugiperda... [more]
RL13_SCHPO4.780e-3848.8960S ribosomal protein L13 OS=Schizosaccharomyces p... [more]
RL13_SCHMA1.391e-3746.4360S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_CAEEL3.788e-3543.8960S ribosomal protein L13 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13G10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13G10-M20-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047380 ID=CX047380; Name=CX047380; organism=Citrus sinensis; type=EST; length=822bp
TTTTTTTTTTTTTTTTAAAGTAGCCAATGCTTTAAGGCTTTGGCAAGAAT
CTACTTCATTCAGGAAAGAATTCAAAACCAAAACAACATTGGATAGGTCC
ATTGCAAATAATATAACCAAGAAATCTTCCCACATTCAAAATAAAATAAC
AATTTCAAGCCTAAAGCTAACAGATTGAAATCACTATAACAAAATGCCAA
AAACAGGCCCACATTCAAAGTGTTGCTTAAACAAGTTTTTTTACTTCTTC
TCTTCCTTTTCAGCCTCTGCAGCCTTCTTCATCCTGGCACCAAAATGGCG
CTCGTTCACACGCTCGATACGGAGTTTGTCATAAGCCTTGAAGGACTTCA
TATCTTGAGTAACCTTAACAAGCTCGACAGTAGGCTTCTCAGGAGCAATG
GGCATGTAAGGTCCTTGTACTTGAGTTGCTGTTGCCAATTCCTCAGGGGC
AGAATCACCAGCCTTGAACTTGCGAGCACGTCTTGGGAAAACAACCAACT
TAGCCTTGTAAGTCTTGAGCCTCTGAACATTAGATTGAAGACCCTCAAGA
GAACGGTTCTTGCGTCGATGATCGACTGAAACACCAATTGTCGGAGCCAG
TTTCTTGGGAATTCCAGCAGCCTTGAGTTCCTCAAGAGTAAAGCCTCTGC
CAGCCCTTAATTTCATGTTGTATTTCAAAGTCTGGCCATGAACGACGGGA
CGAAGCGGCCCAGCAGTAGGGCGAGGGAAGATTTTAACGGCCTTCTTTTG
ACGAGCGACTCGTCGTCGATTTTTGCGAGCAGGTTGGTTGAACCAAGTCT
TGACATAGTTCTGCCAATGCTT
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