CX047380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2) HSP 1 Score: 181.8 bits (460), Expect = 4.038e-45 Identity = 92/180 (51.11%), Postives = 120/180 (66.67%), Query Frame = -1 Query: 283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822 K WQ V TWFNQP +I PRP AGP+RP+V T++Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+PEEL ATQ+ GP MPI + ++++ K+FKA+ LR+ R N R FG R Sbjct: 16 KDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 8.995e-45 Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = -1 Query: 283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822 K WQ V TWFNQP +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R Sbjct: 16 KDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3) HSP 1 Score: 179.874 bits (455), Expect = 1.534e-44 Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = -1 Query: 283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822 K WQ V TWFNQP +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R Sbjct: 16 KDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4) HSP 1 Score: 179.489 bits (454), Expect = 2.004e-44 Identity = 90/180 (50.00%), Postives = 120/180 (66.67%), Query Frame = -1 Query: 283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822 K WQ V TWFNQP +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP MP+ + +T++ K+FKA+ LR+ R N R FG R Sbjct: 16 KDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3) HSP 1 Score: 179.104 bits (453), Expect = 2.617e-44 Identity = 92/180 (51.11%), Postives = 119/180 (66.11%), Query Frame = -1 Query: 283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822 K WQ V TWFNQP +I PRP +GPLRPVV T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+ E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP MPI + +T++ K+FKA+ LR+ R N R FG R Sbjct: 16 KDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3) HSP 1 Score: 176.407 bits (446), Expect = 1.696e-43 Identity = 90/180 (50.00%), Postives = 119/180 (66.11%), Query Frame = -1 Query: 283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822 K WQ V TWFNQP +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP M I + +T++ K+FKA+ LR+ R N R FG R Sbjct: 16 KDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.138e-39 Identity = 84/180 (46.67%), Postives = 113/180 (62.78%), Query Frame = -1 Query: 283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822 K WQ +VKTWFNQP + PRP AGPLRPVV T++Y+ K+RAGRGFTL E++AAG+ A TIG++VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K G++ EE ATQ++GP MP+ P +T++ K FKAY LR R + G R Sbjct: 15 KDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARSIAKLVGIR 193
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.780e-38 Identity = 88/180 (48.89%), Postives = 111/180 (61.67%), Query Frame = -1 Query: 283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822 K WQ YVKTWFNQP KI PRP +RP V T++YNMK+RAGRGFTLEELKAAG+ +++A TIG+ VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+ A T V +PI E E +T++ K+F A+ L ER R+ GAR Sbjct: 16 KDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQE-AVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.391e-37 Identity = 78/168 (46.43%), Postives = 108/168 (64.29%), Query Frame = -1 Query: 319 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLR 822 K WQ VKTWFNQP +I PRP +GPLRP+V+ T +YNMK+R+GRGF+L+E++AAG+ K A TIG++VDHRR+N S+EGLQ NV RLK YKAKL++FP K +A D+ +E+ ATQ++ P +PI ++ K T + A+ +R Sbjct: 15 KKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182
BLAST of CX047380 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.788e-35 Identity = 79/180 (43.89%), Postives = 110/180 (61.11%), Query Frame = -1 Query: 283 KHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 822 KHW +KTWF+QP +I PRP AG LR VV +YN K R GRGF+L+ELKAAGI + A TIG++VD RR N++ EGL++N RLK YKAKL++FP++A K GDS+ EEL A Q++G +P++ E +VT + + + LR ER ++++ G R Sbjct: 16 KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRGKR 195 The following BLAST results are available for this feature:
BLAST of CX047380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047380 ID=CX047380; Name=CX047380; organism=Citrus sinensis; type=EST; length=822bpback to top |