CX047315

Overview
NameCX047315
Unique NameCX047315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047315 vs. ExPASy Swiss-Prot
Match: RL14_NANEQ (50S ribosomal protein L14P OS=Nanoarchaeum equitans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25
Identity = 58/122 (47.54%), Postives = 81/122 (66.39%), Query Frame = -3
Query:  247 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNA-GVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 609
            LPV A +N ADN+GAK + +I+VKG KGR  RL  A + D+V+ +V+ GKPD+  ++  AV+VR +K WRR+DG  + FEDNA  ++ +  G  KG+ I  PI KE A+ WP +A  A  IV
Sbjct:   12 LPVGAYLNVADNSGAKVVKLIAVKGYKGRKRRLAKAGIADLVIVSVRDGKPDMIGQIFKAVVVRMKKEWRRRDGTRIKFEDNAVALLKDDYGTPKGTIIKTPIAKEVAERWPDLAKIARIIV 133          
BLAST of CX047315 vs. ExPASy Swiss-Prot
Match: RL14_METLZ (50S ribosomal protein L14P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.265e-24
Identity = 51/121 (42.15%), Postives = 83/121 (68.60%), Query Frame = -3
Query:  247 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 609
            L   + + CADNTGA+ + I+SV G  G  NR P   +GD+   TVKKG PD+++K++ AV+VRQ+K +RR +G+ + FE+NA +++N  G+ +G+ I GP+ +E A+ +P++ S A  I+
Sbjct:   12 LQTGSKMVCADNTGARVVQIVSVFGYHGVKNRQPKMGLGDLATVTVKKGTPDMKRKLVRAVVVRQKKEFRRPNGLRVSFEENAMILLNENGDPRGTDIKGPVAREVAERFPKVGSMATIII 132          
BLAST of CX047315 vs. ExPASy Swiss-Prot
Match: RL14_UNCMA (50S ribosomal protein L14P OS=Uncultured methanogenic archaeon RC-I GN=rpl14p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 52/128 (40.62%), Postives = 84/128 (65.62%), Query Frame = -3
Query:  247 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 630
            K ++   +  A  +  ADNTGA+ + +ISV   +GR NR+P A +GD+ + +VKKG P++RK ++  V++RQ+K +RR  G+ + FEDNA V+V+   + KG+ I GP+ +E A+ + +I S A  IV
Sbjct:    5 KAKIPRSVHTATRLEVADNTGARLVEVISVLKYRGRKNRMPKAGIGDIFIGSVKKGTPEMRKTIVRCVVIRQKKEYRRPSGLRVSFEDNACVLVDDNNDPKGTEIKGPVAREVAERYAKIGSTATIIV 132          
BLAST of CX047315 vs. ExPASy Swiss-Prot
Match: RL14_METMJ (50S ribosomal protein L14P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 52/121 (42.98%), Postives = 80/121 (66.12%), Query Frame = -3
Query:  247 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 609
            L   + + C+DNTGA+ + ++SV    G   R P   +GD+   +VKKG PD+R+K+  AV++RQ+K  RR +G+ + FEDNA V++N +GE KG+ I G + +E A+ +P+IAS A  IV
Sbjct:   12 LATGSRMVCSDNTGARLVEVVSVDRYHGVRRRQPCLGLGDVATVSVKKGTPDMRRKLEKAVVIRQKKEIRRPNGIRLSFEDNAMVLINERGEPKGTEIKGAVPREIAERFPKIASMATTIV 132          
BLAST of CX047315 vs. ExPASy Swiss-Prot
Match: RL14_METHJ (50S ribosomal protein L14P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 52/115 (45.22%), Postives = 76/115 (66.09%), Query Frame = -3
Query:  247 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 591
            + CADNTGA+ + ++SV G  G   R P   + D+   +VKKG PD+R+K++ AV++RQ+K  RR  G+ + FEDNA V+V+ K E +G+ I GP+ +E A  +PRI S A  IV
Sbjct:   18 LTCADNTGARVVQVVSVFGYHGVRRRQPKLGLADIATVSVKKGTPDMRRKLVRAVVIRQKKEIRRPSGLRLSFEDNAVVVVDDKNEPRGTEIKGPVAREVAIRYPRIGSMATIIV 132          
BLAST of CX047315 vs. ExPASy Swiss-Prot
Match: RL14_DEHE1 (50S ribosomal protein L14 OS=Dehalococcoides ethenogenes (strain 195) GN=rplN PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.493e-17
Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = -3
Query:  286 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 591
            +N ADNTGAK +  I+V G   +L     A VGD+++A VKK  PD + K   V+ AV+VR  KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E  D
Sbjct:    8 LNVADNTGAKKIMCINVLGGSRKLQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108          
BLAST of CX047315 vs. ExPASy Swiss-Prot
Match: RL14_DEHSC (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain CBDB1) GN=rplN PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = -3
Query:  286 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 591
            +N ADNTGAK +  I+V G   ++     A VGD+++A VKK  PD + K   V+ AV+VR  KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E  D
Sbjct:    8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108          
BLAST of CX047315 vs. ExPASy Swiss-Prot
Match: RL14_DEHSB (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain BAV1) GN=rplN PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = -3
Query:  286 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 591
            +N ADNTGAK +  I+V G   ++     A VGD+++A VKK  PD + K   V+ AV+VR  KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E  D
Sbjct:    8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108          
BLAST of CX047315 vs. ExPASy Swiss-Prot
Match: RL14_THERP (50S ribosomal protein L14 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplN PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = -3
Query:  259 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAA 582
            ADNTGAK +  I V G  G  +R  +  VGD+++A+VKK +P+   K   V+ AVIVR +K +RRKDG ++ F+DNA V+V P+G+ +G+ I GP+ +E  +  + RI S A
Sbjct:   11 ADNTGAKEIMCIRVLG--GSKHRYGT--VGDLIVASVKKAEPNAAVKKGDVVYAVIVRTKKEYRRKDGSYIKFDDNAAVLVTPQGQPRGTRIFGPVARELREKHYMRIISLA 118          
BLAST of CX047315 vs. ExPASy Swiss-Prot
Match: RL14_SACEN (50S ribosomal protein L14 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  286 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 582
            ADN+GAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVRQ+K  RR DG ++ F++NA V++ P GE +G+ I GP+G+E  D
Sbjct:   11 ADNSGAKEILTIRVLGGSGRRY----AGIGDIIVATVKDAIPGANVKKGEVVKAVIVRQKKEKRRADGSYIRFDENAAVLIKPSGEPRGTRIFGPVGRELRD 108          
The following BLAST results are available for this feature:
BLAST of CX047315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
RL14_NANEQ9.763e-2547.5450S ribosomal protein L14P OS=Nanoarchaeum equitan... [more]
RL14_METLZ8.265e-2442.1550S ribosomal protein L14P OS=Methanocorpusculum l... [more]
RL14_UNCMA3.141e-2340.6350S ribosomal protein L14P OS=Uncultured methanoge... [more]
RL14_METMJ1.559e-2242.9850S ribosomal protein L14P OS=Methanoculleus maris... [more]
RL14_METHJ2.036e-2245.2250S ribosomal protein L14P OS=Methanospirillum hun... [more]
RL14_DEHE17.493e-1746.6750S ribosomal protein L14 OS=Dehalococcoides ethen... [more]
RL14_DEHSC1.278e-1645.7150S ribosomal protein L14 OS=Dehalococcoides sp. (... [more]
RL14_DEHSB1.278e-1645.7150S ribosomal protein L14 OS=Dehalococcoides sp. (... [more]
RL14_THERP1.413e-1544.6450S ribosomal protein L14 OS=Thermomicrobium roseu... [more]
RL14_SACEN2.410e-1545.1050S ribosomal protein L14 OS=Saccharopolyspora ery... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13D08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13D08-G16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047315 ID=CX047315; Name=CX047315; organism=Citrus sinensis; type=EST; length=683bp
TTTTGATAAAGTTGATAAAATTGCAACCGTATTGCATCGGAAGTTGAATT
CAAAAACACAATCAGCATGAAAATGATATCAAGATCAACAAAACTCCAAA
CTTTCATACCACTTCCAAAACTAGAACAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGAATTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGTCTTAAACG
ATAGCATTGGCTGCACTTGCAATCCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGTGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCTGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACAGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCGC
GTCCTCGCTTCGACATTTTCGCACCTAAAGCCT
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