CX047198

Overview
NameCX047198
Unique NameCX047198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_FUSNN (Triosephosphate isomerase OS=Fusobacterium nucleatum subsp. nucleatum GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.583e-11
Identity = 37/116 (31.90%), Postives = 60/116 (51.72%), Query Frame = -2
Query:    2 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349
            R+  + GNWK    ++E  + ++ L +                      VK +  S+  +AA+N + +  GA+TGEVS +ML ++ + +VILGHSERR    ES++F+  KV   L
Sbjct:    2 RRLVIAGNWKMYKNNKEAVETLTQLKDLTRDVKNVDIVIGAPFTCLSDAVKIVEGSNVKIAAENVYPKIEGAYTGEVSPKMLKDIGVTYVILGHSERREYFKESDEFINQKVKAVL 117          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.583e-11
Identity = 46/121 (38.02%), Postives = 60/121 (49.59%), Query Frame = -2
Query:    2 RKFFVGGNWKCN----GTSEEVKKIVSTL-NEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349
            RK FV GNWK N    G      +I+  L +EA                      +S ++    +AAQNC+    GA+TGE+SA ML N    +VILGHSERR   NE+++ V  KV  AL
Sbjct:    2 RKKFVAGNWKMNKDLLGAVSLATEILQLLGDEAPTCEVAIAPTFLCQQAVFQVIDESAIK----LAAQNCFYEDQGAYTGEISAAMLRNSGCEYVILGHSERRQYFNETDEIVNKKVKNAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.583e-11
Identity = 43/117 (36.75%), Postives = 60/117 (51.28%), Query Frame = -2
Query:    2 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLL-RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349
            RK  V GNWK N   +E   +   LNEA                     V  ++ ++   V A+NC  +  GA+TGEVSAEM+ +    +VILGHSERRA  +E+ + + +KV  AL
Sbjct:    2 RKNIVAGNWKMNKNLQEGIALAKELNEALAADKPNCDVVICTPFIHLASVTPIVDKAVIGVGAENCADKVSGAYTGEVSAEMVASTGAEYVILGHSERRAYYHETVEILEEKVKLAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_YERE8 (Triosephosphate isomerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 37/107 (34.58%), Postives = 53/107 (49.53%), Query Frame = -2
Query:   17 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 337
            V GNWK NG++  V ++++ L +                         L  S   + AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++F+  K
Sbjct:    6 VMGNWKLNGSTHMVNELIANLRKELSTVEGCGVAIAPPAIYLNQAKHELSGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDEFIAKK 112          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_THICR (Triosephosphate isomerase OS=Thiomicrospira crunogena (strain XCL-2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 39/117 (33.33%), Postives = 56/117 (47.86%), Query Frame = -2
Query:    2 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRK-GGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349
            R+ FV GNWK +G    +K +V+ LN                          L+  +  +  QN  +    GA+TGE SA ML ++   +VILGHSERRA+  E++  +  KV  AL
Sbjct:    2 RQLFVAGNWKMHGDKASIKTLVTGLNAKADSVGDVLVAVCPPAIYLDYTKNCLMAGEIALGGQNMAIEPVQGAYTGETSASMLKDVGCQYVILGHSERRAIYGETDQDIAAKVKTAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRPD (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 36/113 (31.86%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+RK  + GNWK N   +E K  V  +                        ++S   S   VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIESAKDSVLKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_MYCMO (Triosephosphate isomerase OS=Mycoplasma mobile GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 39/120 (32.50%), Postives = 58/120 (48.33%), Query Frame = -2
Query:    2 RKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLR----SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349
            RK  + GNWK N T  E +  V   N+                         + +    ++  +AAQN      GAFTGE+SAEML++L +  V+LGHSERR   +E+++ V  K+  A+
Sbjct:    2 RKKIIIGNWKMNKTKTEAENFVKEFNKITSELNLKLDKNLVAGLALPFTSLGIKKEGNFANLVIAAQNFHQNNSGAFTGEISAEMLLDLGVKMVVLGHSERREFFHETDEIVNMKMHQAI 121          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_GRABC (Triosephosphate isomerase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 40/112 (35.71%), Postives = 54/112 (48.21%), Query Frame = -2
Query:    5 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYA 337
            + GNWK NG     + ++  L +A                       S+L  S   V AQ+C + + GA TG++SAEMLV     WVILGHSERR    E ++ V +KV  A
Sbjct:    5 IAGNWKMNGLRSTSESLLQALRDAAPHALRNCDMLICPPATLIAQAASVLAGSGIEVGAQDCHMARSGAHTGDLSAEMLVEAGAHWVILGHSERRRDHGELSETVREKVIAA 116          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.407e-11
Identity = 38/117 (32.48%), Postives = 61/117 (52.14%), Query Frame = -2
Query:    2 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 352
            AR+ F+GGN+KCNG+ + +K  V+ +  A                     + +       +AAQN ++   GA+TGE S EML ++ +  VI+GHSERR ++ E+++    K   AL
Sbjct:    3 ARRPFIGGNFKCNGSLDFIKSHVAAI-AAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRIAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRTD (Triosephosphate isomerase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 36/113 (31.86%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+RK F+ GNWK N   EE K  V  +                        + +   S+  VAAQN +    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSADLVEAGIAVPAVDLTTVIAAAKGSNLKVAAQNTYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKK 113          
The following BLAST results are available for this feature:
BLAST of CX047198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TPIS_FUSNN2.583e-1131.90Triosephosphate isomerase OS=Fusobacterium nucleat... [more]
TPIS_CHLT32.583e-1138.02Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_BACV82.583e-1136.75Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]
TPIS_YERE84.407e-1134.58Triosephosphate isomerase OS=Yersinia enterocoliti... [more]
TPIS_THICR4.407e-1133.33Triosephosphate isomerase OS=Thiomicrospira crunog... [more]
TPIS_STRPD4.407e-1131.86Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_MYCMO4.407e-1132.50Triosephosphate isomerase OS=Mycoplasma mobile GN=... [more]
TPIS_GRABC4.407e-1135.71Triosephosphate isomerase OS=Granulibacter bethesd... [more]
TPI1_GIALA4.407e-1132.48Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_STRTD5.755e-1131.86Triosephosphate isomerase OS=Streptococcus thermop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12G02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G02-M3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047198 ID=CX047198; Name=CX047198; organism=Citrus sinensis; type=EST; length=386bp
AAAGTGCATAAGCAACTTTATCTCCAACAAAATCATTTGACTCATTCAAA
AGAGCTCTTCTTTCAGAATGACCAAGAATGACCCAAGGAATGCTCAAGTT
GACAAGCATCTCAGCACTAACTTCCCCGGTAAAAGCACCACCTTTGCGAA
CCCAGCAATTTTGAGCGGCAACATGGAAATCAGACCGCAACAGACTCTTG
ACCAAAGGAAGAAACACAAACGGAGGGCTTACAACAACCTCCACAACATC
CTCAGAAGGAACTTCAGCTTCATTCAATGTAGAAACAATCTTCTTCACTT
CCTCAGATGTCCCATTGCATTTCCAGTTGCCGCCGACGAAGAATTTGCGG
GCCATGACGACGATTGAATTTTGTTTGGTTTGGCCT
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