CX047198

Overview
NameCX047198
Unique NameCX047198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRT2 (Triosephosphate isomerase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=tpiA PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 36/113 (31.86%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+RK F+ GNWK N   EE K  V  +                        + +   S+  VAAQN +    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSADLVEAGIAVPAVDLTTVIAAAKGSNLKVAAQNTYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_STRT1 (Triosephosphate isomerase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 36/113 (31.86%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+RK F+ GNWK N   EE K  V  +                        + +   S+  VAAQN +    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSADLVEAGIAVPAVDLTTVIAAAKGSNLKVAAQNTYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_RHOBA (Triosephosphate isomerase OS=Rhodopirellula baltica GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 37/118 (31.36%), Postives = 59/118 (50.00%), Query Frame = -2
Query:    2 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 355
            M+R+  + GNWK N  +E    +   + +A                       +++ +   + AQN +  + GAFTGEV+A ML ++   +VILGHSERR L+ E++  V  K+  AL
Sbjct:    1 MSRRILIAGNWKMNMRAESGASLAKGIVDAVGKSPAVEVVLCPPSVYLSGVADAVVGTPVELGAQNLYAAEDGAFTGEVNASMLTDVGCRFVILGHSERRQLMGETDACVAKKLHAAL 118          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_LACDL (Triosephosphate isomerase OS=Lactobacillus delbrueckii subsp. lactis GN=tpiA PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 34/113 (30.09%), Postives = 56/113 (49.56%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+R   + GNWK N   +E  + V+ + +                      +K+   S+ HV A+NC+    GAFTGE S  +L  + + +VI+GHSERR   +E+++ +  K
Sbjct:    1 MSRTPIIAGNWKLNMNPKETVEFVNAVKDQLPDPSKVESVICAPAVDLDALLKAAEGSNLHVGAENCYWENSGAFTGETSPAVLKEMGVQYVIIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_LACDE (Triosephosphate isomerase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 34/113 (30.09%), Postives = 56/113 (49.56%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+R   + GNWK N   +E  + V+ + +                      +K+   S+ HV A+NC+    GAFTGE S  +L  + + +VI+GHSERR   +E+++ +  K
Sbjct:    1 MSRTPIIAGNWKLNMNPKETVEFVNAVKDQLPDPSKVESVICAPAVDLDALLKAAEGSNLHVGAENCYWENSGAFTGETSPAVLKEMGVQYVIIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_LACDB (Triosephosphate isomerase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 34/113 (30.09%), Postives = 56/113 (49.56%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+R   + GNWK N   +E  + V+ + +                      +K+   S+ HV A+NC+    GAFTGE S  +L  + + +VI+GHSERR   +E+++ +  K
Sbjct:    1 MSRTPIIAGNWKLNMNPKETVEFVNAVKDQLPDPSKVESVICAPAVDLDALLKAAEGSNLHVGAENCYWENSGAFTGETSPAVLKEMGVQYVIIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_LACDA (Triosephosphate isomerase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=tpiA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 34/113 (30.09%), Postives = 56/113 (49.56%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M+R   + GNWK N   +E  + V+ + +                      +K+   S+ HV A+NC+    GAFTGE S  +L  + + +VI+GHSERR   +E+++ +  K
Sbjct:    1 MSRTPIIAGNWKLNMNPKETVEFVNAVKDQLPDPSKVESVICAPAVDLDALLKAAEGSNLHVGAENCYWENSGAFTGETSPAVLKEMGVQYVIIGHSERRDYFHETDEDINKK 113          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPU (Triosephosphate isomerase OS=Mycoplasma pulmonis GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 38/122 (31.15%), Postives = 61/122 (50.00%), Query Frame = -2
Query:    2 RKFFVGGNWKCNGTSEEVKKIVST------LNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYAL 349
            +K  + GNWK N T +E +  ++       LN A+                     + L +++ ++ AQN    + GAFTGE+SA+ML +++  +VI+GHSERR    E+N  V  K   A+
Sbjct:    2 KKLLIIGNWKMNKTYDEARDFINAFSNAYALNGAKISENIEYGIAPSFTNMSLFNKELLEKTNINLVAQNINENRSGAFTGEISAQMLKSINAKYVIVGHSERRQNYRETNKIVNQKAKAAI 123          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_ERWCT (Triosephosphate isomerase OS=Erwinia carotovora subsp. atroseptica GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 37/107 (34.58%), Postives = 53/107 (49.53%), Query Frame = -2
Query:   17 VGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 337
            V GNWK NG++  V ++++ L +                         L  S   + AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++F+  K
Sbjct:    6 VMGNWKLNGSTNLVNELIAGLRKELSTVDGCGVAIAPPAIYLDQANHQLAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDEFIAKK 112          
BLAST of CX047198 vs. ExPASy Swiss-Prot
Match: TPIS_WIGBR (Triosephosphate isomerase OS=Wigglesworthia glossinidia brevipalpis GN=tpiA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 42/113 (37.17%), Postives = 54/113 (47.79%), Query Frame = -2
Query:   17 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXVKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDK 355
            M  K  +  NWK NG    VKKI+  LNE                       K +L+ +  +AAQN  V   G+FTGE+S  ML    + +VI+GHSERR   NES + V  K
Sbjct:    1 MKLKPLILSNWKLNGNCLLVKKILLKLNEKLKNKNNLKVVIAPPVIYLSEFKKYVLKKNIFLAAQNVDVNLTGSFTGEISPIMLYEFGVKYVIIGHSERRLYHNESIEDVTKK 113          
The following BLAST results are available for this feature:
BLAST of CX047198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TPIS_STRT25.755e-1131.86Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_STRT15.755e-1131.86Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_RHOBA5.755e-1131.36Triosephosphate isomerase OS=Rhodopirellula baltic... [more]
TPIS_LACDL5.755e-1130.09Triosephosphate isomerase OS=Lactobacillus delbrue... [more]
TPIS_LACDE5.755e-1130.09Triosephosphate isomerase OS=Lactobacillus delbrue... [more]
TPIS_LACDB5.755e-1130.09Triosephosphate isomerase OS=Lactobacillus delbrue... [more]
TPIS_LACDA5.755e-1130.09Triosephosphate isomerase OS=Lactobacillus delbrue... [more]
TPIS_MYCPU7.517e-1131.15Triosephosphate isomerase OS=Mycoplasma pulmonis G... [more]
TPIS_ERWCT7.517e-1134.58Triosephosphate isomerase OS=Erwinia carotovora su... [more]
TPIS_WIGBR9.817e-1137.17Triosephosphate isomerase OS=Wigglesworthia glossi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12G02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12G02-M3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047198 ID=CX047198; Name=CX047198; organism=Citrus sinensis; type=EST; length=386bp
AAAGTGCATAAGCAACTTTATCTCCAACAAAATCATTTGACTCATTCAAA
AGAGCTCTTCTTTCAGAATGACCAAGAATGACCCAAGGAATGCTCAAGTT
GACAAGCATCTCAGCACTAACTTCCCCGGTAAAAGCACCACCTTTGCGAA
CCCAGCAATTTTGAGCGGCAACATGGAAATCAGACCGCAACAGACTCTTG
ACCAAAGGAAGAAACACAAACGGAGGGCTTACAACAACCTCCACAACATC
CTCAGAAGGAACTTCAGCTTCATTCAATGTAGAAACAATCTTCTTCACTT
CCTCAGATGTCCCATTGCATTTCCAGTTGCCGCCGACGAAGAATTTGCGG
GCCATGACGACGATTGAATTTTGTTTGGTTTGGCCT
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