CX047115

Overview
NameCX047115
Unique NameCX047115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RABC_DICDI (Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.003e-41
Identity = 80/191 (41.88%), Postives = 126/191 (65.97%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTV--EQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIR-GQPVNQKSGCC 865
            +G+SGVGKS +L+RF D+++ + +  T+GVDF ++T+  ++ G+T+KLQ+WDTAGQERF++IT ++YRG+HG+IVVYDVTD +SF   K W+ +I++Y  + +  +LVGNK D+ A + V++E  +  A+++   F+E SAK    V Q F  +   I+  M +   + N      Q+     V QK GCC
Sbjct:   12 VGESGVGKSSILVRFTDNTFSQHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQERFKSITQTFYRGSHGVIVVYDVTDPKSFERCKNWVEDINQYTQDGMIIILVGNKSDMVAQRKVTFEQGQEMAEQLKTKFLEVSAKENNGVTQVFDLLVQDIEATMKNSKVAQN------QLNLNSEVGQKRGCC 196          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB12_MOUSE (Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 1.003e-41
Identity = 85/181 (46.96%), Postives = 122/181 (67.40%), Query Frame = -2
Query:  326 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 865
            IG  GVGK+ L+ RF DD++ E+  ST+GVDFKI+TVE  GK I+LQIWDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YASE+   LLVGNK D   ++ +S +  + FA +I G+ F E SAK   NV++ F+ +   I  +M      N      + ++ +P
Sbjct:   47 IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDVLRNELSNSILSLQPEP 227          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.710e-41
Identity = 84/160 (52.50%), Postives = 115/160 (71.88%), Query Frame = -2
Query:  386 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 865
            IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+GNK DL A + V  E  +AFA E G+ FMETSAK+A NVE+AF+  A  I  ++
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKI 171          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.710e-41
Identity = 92/194 (47.42%), Postives = 130/194 (67.01%), Query Frame = -2
Query:  299 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI----KNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 865
            IGDS VGK+ ++ RF+DD++ E  + TIGV+FK++ V+ DGK + L IWDTAGQE+FR + SSYYRGAHGII+ YDVT +ESF+N+  WLNE++ +A+  N+ KLLVGNK D   N+ V+ E    FA +  + F+E SAKS   ++QAF  +A  I    +N  +SQP   N    +V++  +P +   G CS
Sbjct:   12 IGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNLNYWLNEVENFANRSNLVKLLVGNKID-KENREVTREEGAEFAKKKAMLFIECSAKSKIGIQQAFEELAQKIIEIPQNTSSSQPKQRNT--GSVKVEDEP-DHNQGVCS 201          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB12_CANFA (Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.710e-41
Identity = 85/181 (46.96%), Postives = 122/181 (67.40%), Query Frame = -2
Query:  326 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 865
            IG  GVGK+ L+ RF DD++ E+  ST+GVDFKI+TVE  GK I+LQIWDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YASE+   LLVGNK D   ++ ++ +  + FA EI G+ F E SAK   NV++ F+ +   I  +M      N      + ++ +P
Sbjct:   12 IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAHEITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEP 192          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.917e-41
Identity = 88/199 (44.22%), Postives = 126/199 (63.32%), Query Frame = -2
Query:  296 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-----KNRMASQPASNNARPP----TVQIRGQPVNQKSGCCST 865
            IGDSGVGKS +L RF  + +     STIGV+F  RT++ +GKT+K QIWDTAGQER+R ITS+YYRGA G ++ YD+T +++F+NV++WL E+  +   N+  +L GNK DL   + VS +  +A   + G+ F+ETSA  A NV++AF  +   I     K  +A+Q A+ +   P    T+ +     N K GCCST
Sbjct:   18 IGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINVSDNSANVKRGCCST 216          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.917e-41
Identity = 83/160 (51.88%), Postives = 116/160 (72.50%), Query Frame = -2
Query:  386 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 865
            IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK+A+NVE+AF+  A  I  ++
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.917e-41
Identity = 83/160 (51.88%), Postives = 116/160 (72.50%), Query Frame = -2
Query:  386 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 865
            IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK+A+NVE+AF+  A  I  ++
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.917e-41
Identity = 83/160 (51.88%), Postives = 116/160 (72.50%), Query Frame = -2
Query:  386 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 865
            IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK+A+NVE+AF+  A  I  ++
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.917e-41
Identity = 83/160 (51.88%), Postives = 116/160 (72.50%), Query Frame = -2
Query:  386 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 865
            IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK+A+NVE+AF+  A  I  ++
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
The following BLAST results are available for this feature:
BLAST of CX047115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABC_DICDI1.003e-4141.88Ras-related protein RabC OS=Dictyostelium discoide... [more]
RAB12_MOUSE1.003e-4146.96Ras-related protein Rab-12 OS=Mus musculus GN=Rab1... [more]
RAB2_LYMST1.710e-4152.50Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB18_DICDI1.710e-4147.42Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
RAB12_CANFA1.710e-4146.96Ras-related protein Rab-12 (Fragment) OS=Canis fam... [more]
RB11A_TOBAC2.917e-4144.22Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAB2A_RABIT2.917e-4151.88Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB2.917e-4151.88Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE2.917e-4151.88Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA2.917e-4151.88Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12B12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B12-C23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047115 ID=CX047115; Name=CX047115; organism=Citrus sinensis; type=EST; length=866bp
TTTGAGGAGAACAATTGATATATTAGCTACATCGATGACGAACAATATAA
AGAATAGAGGACAGCAAGAAAGATGCCGCTATTCACCAATATTCCTAATT
TGTACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTT
TAGTAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACC
TTCATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAG
AACATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGG
AGCAGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTT
GGCGGCCTAGCATTGTTCGACGCAGGTTGGCTTGCCATCCTATTCTTGAT
TGAAGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAG
CACTTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCT
GTCTCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAAC
TAAAAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAACC
ATTGCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACA
ATGATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACG
CTCTTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTT
GTTCCACAGTGCGGATTTTAAAGTCAACTCCAATGGTGCTAATGTAGCTT
TCCAGATAAGAATCATCAGCAAACCTCAAAAGTAGACACGATTTGCCAAC
ACCAGAATCGCCTATG
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