CX047115

Overview
NameCX047115
Unique NameCX047115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.222e-76
Identity = 138/189 (73.02%), Postives = 163/189 (86.24%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP-ASNNARPPTVQIRGQPVNQKSGCC 865
            IGDS VGKSCLLLRFADD+Y++SYISTIGVDFKIRT+EQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYD T+ ESFNNVKQWL+EIDRYA+E+V KLL+GNK D+  +KVVS ET +A ADE+GIPF+ETSAK + NVEQAF+ +A  IK +M SQ  A+  + P TVQ++GQP+ Q +G C
Sbjct:   14 IGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGGC 202          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.364e-75
Identity = 141/190 (74.21%), Postives = 154/190 (81.05%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPV--NQKSGCC 865
            IGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGI VVYDVTD +SFNNVKQWL EIDRYA+E VNKLLVGNK D+T  KVV Y  AK FAD +GIPF+ETSAK+A+NVEQAF+ MA  IK RM S  A+NN +       G  V  N   GCC
Sbjct:   14 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKASVNVSPGHGVSNNSSGGCC 203          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 5.267e-75
Identity = 141/189 (74.60%), Postives = 157/189 (83.07%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM-ASQPASNNARPPTVQIRGQPVNQKSGCC 865
            IGDSGVGKSCLLLRFADD+Y ES+ISTIGVDFKIRT+E +GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ +F NV+QWL EIDR+A ENVNKLLVGNK DL A KVV + TAKAFAD + IPF+ETSAK +TNVEQAFM MA  IKNR+ ASQP     +   V     P++ KSGCC
Sbjct:   14 IGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPISPKSGCC 202          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 5.824e-74
Identity = 142/188 (75.53%), Postives = 153/188 (81.38%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 865
            IGDSGVGKSCLLLRFADD Y ESYISTIGVDFKI+T+E DGKTIKLQIWDTAGQERF TITSSYYRGAHG +VVYDVTDQES+ NVKQWL EIDR+ASENVNKLLVGNK DLT  KVV   TAK FAD +GIPF+ETSAK+ATNVEQAFM MAA IK +M    AS   R P ++I   PV    G C
Sbjct:   14 IGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 9.934e-74
Identity = 135/195 (69.23%), Postives = 162/195 (83.08%), Query Frame = -2
Query:  296 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP-TVQIRGQPVNQK----SGCCST 865
            IGDS VGKSC LLRFADDSY++SYISTIGVDFKIRTVE +GKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYD+TD ESFNNVKQWL+EIDRYA+++V KLLVGNKCDL  N+ V    A+A+A E+GIPF+ETSAK + NVE+AF+AM+A+IK   A   A+   +P   VQ++G+P+ Q+    S CCST
Sbjct:   14 IGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPIQQEQQKSSRCCST 208          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 5.451e-72
Identity = 136/189 (71.96%), Postives = 153/189 (80.95%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP-ASNNARPPTVQIRGQPVNQKSGCC 865
            IGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT E +GKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQ+SFNNVKQWL EIDRYA E VN+LLVGNK D+   KVV Y  AK FAD + IPF+ETSAK +TNVEQAF+ M+  IK RM +   AS+NA+      +G  V+Q S  C
Sbjct:   14 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVSQSSSNC 202          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 8.145e-68
Identity = 130/190 (68.42%), Postives = 148/190 (77.89%), Query Frame = -2
Query:  305 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA--RPPTVQIRG-QPVNQKSGC 865
            IGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+  DGK IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD  SFNNVKQW+ EI RYA ++V +LLVGNKCDL   K+V   TA+ +AD +GIPF+ETSAKS+ NVEQAFM MA+ IK        +NN+      V+  G  P+ +K  C
Sbjct:   14 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTPIGKKKKC 203          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.006e-67
Identity = 127/186 (68.28%), Postives = 148/186 (79.57%), Query Frame = -2
Query:  308 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSG 865
            IGDSGVGKSCLLLRFADDS+ +++ISTIGVDFKI+T+  DGKTIKLQIWDTAGQERFRTITSSYYRGA GII+VYD TDQ+SF NVKQW+ EIDRYA ENVNKLLVGNK DL   KVV    AK+FA+  GIPF+ETSAK+ATNVE+ F++MA  IKNR+A        +P  V I+ +   +  G
Sbjct:   16 IGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLAD--IQETPKPDEVDIKSKNKTKSGG 199          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.536e-66
Identity = 127/193 (65.80%), Postives = 147/193 (76.17%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP----TVQIRGQPV-NQKSGCC 865
            IG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQIWDTAGQERFRTITSSYYRG+HGII+VYDVTDQESFN VK WL EIDRYA+  V KLLVGNKCDL   +VV Y+ AK FAD   +PF+ETSA  +TNVE AF+ MA  IK  M+ Q  +   +       V ++GQ + N   GCC
Sbjct:   14 IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGGCC 206          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.384e-61
Identity = 112/191 (58.64%), Postives = 148/191 (77.49%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ---IRGQPVNQKSGCC 865
            IGDSGVGKSCLLLRF++DS+  S+I+TIG+DFKIRT+E +GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD++SF N++ W+  I+++A+++VNK+L+GNKCD+   KVV     K+ ADE GI F+ETSAK++ NVE+AF+++A  IK RM   P   N +P  VQ     G   N+K  CC
Sbjct:   21 IGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTP---NEQPQVVQPGTNLGANNNKKKACC 208          
The following BLAST results are available for this feature:
BLAST of CX047115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABD1_ARATH6.222e-7673.02Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
YPT1_NEUCR2.364e-7574.21GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB1A_DICDI5.267e-7574.60Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB1C_HUMAN5.824e-7475.53Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
YPTM1_MAIZE9.934e-7469.23GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
YPT1_SCHPO5.451e-7271.96GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB1B_DICDI8.145e-6868.42Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB1D_DICDI9.006e-6768.28Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
YPT1_YEAST1.536e-6665.80GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB8A_DICDI7.384e-6158.64Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12B12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B12-C23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047115 ID=CX047115; Name=CX047115; organism=Citrus sinensis; type=EST; length=866bp
TTTGAGGAGAACAATTGATATATTAGCTACATCGATGACGAACAATATAA
AGAATAGAGGACAGCAAGAAAGATGCCGCTATTCACCAATATTCCTAATT
TGTACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTT
TAGTAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACC
TTCATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAG
AACATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGG
AGCAGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTT
GGCGGCCTAGCATTGTTCGACGCAGGTTGGCTTGCCATCCTATTCTTGAT
TGAAGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAG
CACTTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCT
GTCTCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAAC
TAAAAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAACC
ATTGCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACA
ATGATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACG
CTCTTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTT
GTTCCACAGTGCGGATTTTAAAGTCAACTCCAATGGTGCTAATGTAGCTT
TCCAGATAAGAATCATCAGCAAACCTCAAAAGTAGACACGATTTGCCAAC
ACCAGAATCGCCTATG
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