CX047115

Overview
NameCX047115
Unique NameCX047115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.223e-47
Identity = 101/167 (60.48%), Postives = 125/167 (74.85%), Query Frame = -2
Query:  377 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI----KNRMASQ 865
            IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQIWDTAGQERFRTITS+YYRG HG+IVVYDVT  ESF NVK+WL+EI++   ++V ++LVGNK D    KVV  E A  FA ++GI   ETSAK   NVE+ F  +   +    K+ +A Q
Sbjct:   14 IGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 179          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.223e-47
Identity = 101/167 (60.48%), Postives = 125/167 (74.85%), Query Frame = -2
Query:  377 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI----KNRMASQ 865
            IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQIWDTAGQERFRTITS+YYRG HG+IVVYDVT  ESF NVK+WL+EI++   ++V ++LVGNK D    KVV  E A  FA ++GI   ETSAK   NVE+ F  +   +    K+ +A Q
Sbjct:   14 IGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 179          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.724e-47
Identity = 95/189 (50.26%), Postives = 130/189 (68.78%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIRGQPVNQKSGCC 865
            IGDSGVGK+C+L RF+DD++  ++ISTI +DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID++A+E+V ++L+ NKCD+   +VV     +  A E  I F ETSAK+  N+E+AF+ +   I +     +P S N     +   G     KS CC
Sbjct:   15 IGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RABG1_DICDI (Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.558e-47
Identity = 96/189 (50.79%), Postives = 127/189 (67.20%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFAD-DSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 865
            IGDS VGK+ LLLRF D +++ E+ ++   VD+K + +  DG+T  LQIWDTAGQERFRTITSS+YRGAHG++V YDVTDQ ++NNV  W+ EI RY    V+++LVGNKCDL   K+V+   A+ +AD +GIPF+ETSA +  NVE+AFMAMA  I          +  +P    + G P   K   C
Sbjct:   12 IGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGNKCDLEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEIYRNHIGGSKPSVVKP----VCGSPPRTKKNIC 196          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 6.069e-47
Identity = 86/171 (50.29%), Postives = 125/171 (73.10%), Query Frame = -2
Query:  356 IGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 865
            +GDSGVGK+CLL+RF D ++L  ++IST+G+DF+ + ++ DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T  +VV  E  +  A E G+PFMETSAKS  NV+ AF A+A  +K R    P+    R
Sbjct:   70 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKAPSEPRFR 240          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 7.926e-47
Identity = 91/192 (47.40%), Postives = 133/192 (69.27%), Query Frame = -2
Query:  299 IGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQK--SGCCS 865
            +GDSGVGK+C L++F D ++L  ++I+T+G+D + + V  DG  +KLQIWDTAGQERFR++T +YYR A  ++++YD+T+Q SF+N++ WL EI  YA  +V  +L+GNK D+++ +V+  E  +  A E G+PFMETSAK+  NVE AF+A+A  +K R   QP       P+ QIR    +QK  S CCS
Sbjct:   35 LGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIAKELKYRAGRQPDE-----PSFQIRDYVESQKKRSSCCS 221          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.926e-47
Identity = 85/171 (49.71%), Postives = 127/171 (74.27%), Query Frame = -2
Query:  356 IGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 865
            +GDSGVGK+CLL+RF D ++L  ++IST+G+DF+ + ++ DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T ++VV  E  +  A E G+PFMETSA++  NV+ AF A+A  +K R A  P+    R
Sbjct:   73 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPSEPRFR 243          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 186.037 bits (471), Expect = 2.306e-46
Identity = 89/192 (46.35%), Postives = 135/192 (70.31%), Query Frame = -2
Query:  299 IGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQK--SGCCS 865
            +GD+GVGK+C L++F D ++L  ++I+T+G+DF+ + V  DG  +KLQIWDTAGQERFR++T +YYR A  ++++YD+T++ SF+N++ WL EI  YA  +V  +L+GNK D+++ +V+  E  +  A E G+PF+ETSAK+  NVE AF+A+A  +K R     A + A  P+ QIR    +QK  S CCS
Sbjct:   35 LGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYR-----AGHQADEPSFQIRDYVESQKKRSSCCS 221          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.550e-45
Identity = 89/170 (52.35%), Postives = 122/170 (71.76%), Query Frame = -2
Query:  353 GDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARP 862
            GDSGVGK+ +L R  DD++ E++I TIG++FKI+TV  +GK IKLQIWDTAG++RFR + +S+YRG HG+I+VYDVTDQ SF NV  W+ +I RYA+ENV K+++GNK DL + KVV    A+ FAD + IPF E SAK + N+E+AF+++     NR+          P
Sbjct:   15 GDSGVGKTSILFRITDDTFTETHI-TIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPFKEISAKQSINIEEAFISLVKLCINRIEETSLKKTQSP 182          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.550e-45
Identity = 80/161 (49.69%), Postives = 121/161 (75.16%), Query Frame = -2
Query:  383 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 865
            IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G I++YDVT+++SFN+V+ W+ +I  Y+ +N   +LVGNKCD+   +V+S+E  +  AD++G+ F ETSAK   NV+  F  +   I ++M+
Sbjct:   27 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMS 187          
The following BLAST results are available for this feature:
BLAST of CX047115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB35_MOUSE1.223e-4760.48Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN1.223e-4760.48Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RAB10_RAT2.724e-4750.26Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RABG1_DICDI3.558e-4750.79Ras-related protein RabG1 OS=Dictyostelium discoid... [more]
RAB26_RAT6.069e-4750.29Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB37_MOUSE7.926e-4747.40Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RAB26_MOUSE7.926e-4749.71Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RAB37_HUMAN2.306e-4646.35Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RABF1_DICDI2.550e-4552.35Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RAB3_DROME2.550e-4549.69Ras-related protein Rab-3 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12B12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B12-C23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047115 ID=CX047115; Name=CX047115; organism=Citrus sinensis; type=EST; length=866bp
TTTGAGGAGAACAATTGATATATTAGCTACATCGATGACGAACAATATAA
AGAATAGAGGACAGCAAGAAAGATGCCGCTATTCACCAATATTCCTAATT
TGTACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTT
TAGTAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACC
TTCATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAG
AACATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGG
AGCAGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTT
GGCGGCCTAGCATTGTTCGACGCAGGTTGGCTTGCCATCCTATTCTTGAT
TGAAGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAG
CACTTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCT
GTCTCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAAC
TAAAAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAACC
ATTGCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACA
ATGATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACG
CTCTTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTT
GTTCCACAGTGCGGATTTTAAAGTCAACTCCAATGGTGCTAATGTAGCTT
TCCAGATAAGAATCATCAGCAAACCTCAAAAGTAGACACGATTTGCCAAC
ACCAGAATCGCCTATG
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