CX047115

Overview
NameCX047115
Unique NameCX047115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.682e-44
Identity = 96/199 (48.24%), Postives = 127/199 (63.82%), Query Frame = -2
Query:  299 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ--PASNN--------ARPPTVQIRGQPVNQKSGCCS 865
            IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +LVGNKCDL+  + VSYE  + FA E G+ FME SAK+A NVE+AF+  A +I  ++       SN         A P      G   +Q  GCCS
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGYAIPGQSGGAGSSSSQGGGCCS 210          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.809e-44
Identity = 89/193 (46.11%), Postives = 124/193 (64.25%), Query Frame = -2
Query:  305 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM------ASQPASNNARPPTVQIRGQPVNQKSGC 865
            IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL   +VV  E  +  AD++G  F E SAK   NV+Q F  +   I ++M      +S P SN   P    +   P  Q S C
Sbjct:   28 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP---ALGDTPPPQPSSC 217          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.809e-44
Identity = 87/192 (45.31%), Postives = 128/192 (66.67%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGCC 865
            IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+   +V+S E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T      P  Q +  C
Sbjct:   36 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC 227          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.202e-44
Identity = 91/199 (45.73%), Postives = 130/199 (65.33%), Query Frame = -2
Query:  296 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-----KNRMASQPASNNARPP----TVQIRGQPVNQKSGCCST 865
            IGDSGVGKS +L RF  + +     STIGV+F  RT++ +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV++WL E+  +A  N+  ++ GNK DL   + VS +   A +++ G+ F+ETSA  ATN+E+AF  +   I     K  +A+Q A+  A  P    T+ +     N K GCCST
Sbjct:   18 IGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST 216          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 8.202e-44
Identity = 86/191 (45.03%), Postives = 130/191 (68.06%), Query Frame = -2
Query:  305 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGC 865
            IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+   +V+S E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T +++  P   +  C
Sbjct:   36 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNT-RLKETPPPPQPNC 225          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.071e-43
Identity = 89/193 (46.11%), Postives = 124/193 (64.25%), Query Frame = -2
Query:  305 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM------ASQPASNNARPPTVQIRGQPVNQKSGC 865
            IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL   +VVS E  +  A ++G  F E SAK   NV+Q F  +   I ++M      +S P SN   P    +   P  Q S C
Sbjct:   28 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP---ALGDTPPPQPSSC 217          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.071e-43
Identity = 86/191 (45.03%), Postives = 129/191 (67.54%), Query Frame = -2
Query:  305 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGC 865
            IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+   +VVS E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T +++  P   +  C
Sbjct:   36 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.071e-43
Identity = 86/191 (45.03%), Postives = 129/191 (67.54%), Query Frame = -2
Query:  305 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGC 865
            IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+   +VVS E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T +++  P   +  C
Sbjct:   36 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.071e-43
Identity = 86/160 (53.75%), Postives = 116/160 (72.50%), Query Frame = -2
Query:  386 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 865
            IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +LVGNKCDL+  + VSYE  + FA E G+ FME SAK+A NVE+AF+  A +I  ++
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171          
BLAST of CX047115 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.399e-43
Identity = 94/205 (45.85%), Postives = 126/205 (61.46%), Query Frame = -2
Query:  302 IGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM-----------------ASQPASNNARPPTVQIRGQPVNQKSGCC 865
            IGD+GVGKSCLLL+F D  +   +  TIGV+F  R V  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK+A NVE+AF+  A  I  ++                   Q  S +  P   Q   + +   SGCC
Sbjct:   12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSISTSVGPSASQRNSRDIGSNSGCC 216          
The following BLAST results are available for this feature:
BLAST of CX047115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2B_MAIZE3.682e-4448.24Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB3D_MOUSE4.809e-4446.11Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3C_HUMAN4.809e-4445.31Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RB11C_LOTJA8.202e-4445.73Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAB3C_BOVIN8.202e-4445.03Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB3D_RAT1.071e-4346.11GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB3C_RAT1.071e-4345.03Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE1.071e-4345.03Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RAB2A_MAIZE1.071e-4353.75Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB2B_HUMAN1.399e-4345.85Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12B12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B12-C23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047115 ID=CX047115; Name=CX047115; organism=Citrus sinensis; type=EST; length=866bp
TTTGAGGAGAACAATTGATATATTAGCTACATCGATGACGAACAATATAA
AGAATAGAGGACAGCAAGAAAGATGCCGCTATTCACCAATATTCCTAATT
TGTACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTT
TAGTAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACC
TTCATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAG
AACATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGG
AGCAGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTT
GGCGGCCTAGCATTGTTCGACGCAGGTTGGCTTGCCATCCTATTCTTGAT
TGAAGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAG
CACTTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCT
GTCTCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAAC
TAAAAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAACC
ATTGCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACA
ATGATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACG
CTCTTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTT
GTTCCACAGTGCGGATTTTAAAGTCAACTCCAATGGTGCTAATGTAGCTT
TCCAGATAAGAATCATCAGCAAACCTCAAAAGTAGACACGATTTGCCAAC
ACCAGAATCGCCTATG
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