CX047113

Overview
NameCX047113
Unique NameCX047113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX1A_DROME (Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.146e-15
Identity = 58/242 (23.97%), Postives = 120/242 (49.59%), Query Frame = 3
Query:    3 ENFFKKVQDIDXXXXXXXXXXXXXQGAHEESKSVTKAPAM-KAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 725
            ++FF +V++I              +  H    ++  AP   +  K+ +E  + ++ K +  ++ K++ +++      Q+        + +++ +T   L +KF + M E+   + + ++              G+  +++ +++++E G+S    Q  I E    Q   TLA+I+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  A+D+VQ+     +KA K Q  +R+
Sbjct:   34 DDFFAQVEEIRGMIDKVQDNVEEVKKKHS---AILSAPQTDEKTKQELEDLMADIKKNANRVRGKLKGIEQNIEQEEQQNKSSADLRIRKTQHST---LSRKFVEVMTEYNRTQTD-YRERCKGRIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIMETQ--QAKQTLADIEARHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTATQDTKKALKYQSKARR 266          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX1A_RAT (Syntaxin-1A OS=Rattus norvegicus GN=Stx1a PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.954e-15
Identity = 50/198 (25.25%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  132 KKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 725
            K+ +E+ + ++ K +  ++SK++ +++   +  Q+ G  + +   R R      L +KF + M E+   + + ++              G+    E ++ ++E+G+        I +    +    L+EI+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  AVD+V+   +  +KA K Q  +R+
Sbjct:   72 KEELEELMSDIKKTANKVRSKLKSIEQ---SIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSD-YRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 263          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX1A_PONAB (Syntaxin-1A OS=Pongo abelii GN=STX1A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.954e-15
Identity = 50/198 (25.25%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  132 KKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 725
            K+ +E+ + ++ K +  ++SK++ +++   +  Q+ G  + +   R R      L +KF + M E+   + + ++              G+    E ++ ++E+G+        I +    +    L+EI+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  AVD+V+   +  +KA K Q  +R+
Sbjct:   72 KEELEELMSDIKKTANKVRSKLKSIEQ---SIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSD-YRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 263          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX1A_HUMAN (Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.954e-15
Identity = 50/198 (25.25%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  132 KKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 725
            K+ +E+ + ++ K +  ++SK++ +++   +  Q+ G  + +   R R      L +KF + M E+   + + ++              G+    E ++ ++E+G+        I +    +    L+EI+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  AVD+V+   +  +KA K Q  +R+
Sbjct:   72 KEELEELMSDIKKTANKVRSKLKSIEQ---SIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSD-YRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 263          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX1A_MOUSE (Syntaxin-1A OS=Mus musculus GN=Stx1a PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.553e-15
Identity = 50/198 (25.25%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  132 KKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 725
            K+ +E+ + ++ K +  ++SK++ +++   +  Q+ G  + +   R R      L +KF + M E+   + + ++              G+    E ++ ++E+G+        I +    +    L+EI+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  AVD+V+   +  +KA K Q  +R+
Sbjct:   72 KEELEELMSDIKKTANKVRSKLKSIEQ---SIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSD-YRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIETRHSEIIKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 263          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX1A_BOVIN (Syntaxin-1A OS=Bos taurus GN=STX1A PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.354e-15
Identity = 49/198 (24.75%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  132 KKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 725
            K+ +E+ + ++ K +  ++SK++ +++   +  Q+ G  + +   R R      L +KF + M E+   + + ++              G+    E ++ ++E+G+        I +    +    L+EI+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  +VD+V+   +  +KA K Q  +R+
Sbjct:   72 KEELEELMSDIKKTANKVRSKLKSIEQ---SIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSD-YRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARR 263          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX12_MOUSE (Syntaxin-12 OS=Mus musculus GN=Stx12 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.267e-14
Identity = 46/147 (31.29%), Postives = 72/147 (48.98%), Query Frame = 3
Query:  294 LKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 734
            L   F   +  FQV++  + +                  D +  +QL+     E+  Q   QE+        L  I+ER  A+R LE  +L++ QIF D+A+++  QGD++D+IE+ V S+  HV+     LQ+A   QK SRK MC
Sbjct:  106 LMNDFSSALNNFQVVQRKVSEKEKESIARARAGSRLSAEDRQREEQLVSFDSHEEWNQMQSQEEEAAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKKMC 252          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX2_HUMAN (Syntaxin-2 OS=Homo sapiens GN=STX2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.287e-14
Identity = 56/205 (27.32%), Postives = 101/205 (49.27%), Query Frame = 3
Query:  129 IKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVD-RSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIM-DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR--KWM 731
            IK+ +E    E+ K +  I++K++ +++    S  +   G  T VD R R      L +KF + M E+    + + +              G+   ++ +++++E+G         I +    QI    L EI+ RH  +  LE  + EL ++F+DMA+ V+ QG+M++NIE  V +A D+V+      +KA K Q  +R  KW+
Sbjct:   70 IKEELEDLNKEIKKTANKIRAKLKAIEQ----SFDQDESGNRTSVDLRIRRTQHSVLSRKFVEAMAEYNEA-QTLFRERSKGRIQRQLEITGRTTTDDELEEMLESGKPSIFTSDIISDS---QITRQALNEIESRHKDIMKLETSIRELHEMFMDMAMFVETQGEMINNIERNVMNATDYVEHAKEETKKAIKYQSKARRKKWI 266          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX2_RAT (Syntaxin-2 OS=Rattus norvegicus GN=Stx2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.211e-14
Identity = 58/205 (28.29%), Postives = 101/205 (49.27%), Query Frame = 3
Query:  129 IKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVD-RSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIM-DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR--KWM 731
            IK+ +E    E+ K +  I+ K++ +++    S  +   G  T VD R R      L +KF D M E+    + + +              G+   +E +++++E+G         I +    QI    L EI+ RH  +  LE  + EL ++F+DMA+ V+ QG+M++NIE  V ++VD+V+      +KA K Q  +R  KW+
Sbjct:   72 IKEELEDLNKEIKKTANRIRGKLKAIEQ----SCDQDENGNRTSVDLRIRRTQHSVLSRKFVDVMTEYNEA-QILFRERSKGRIQRQLEITGRTTTDEELEEMLESGKPSIFISDIISDS---QITRQALNEIESRHKDIMKLETSIRELHEMFMDMAMFVETQGEMVNNIERNVVNSVDYVEHAKEETKKAIKYQSKARRKKWI 268          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX2_MOUSE (Syntaxin-2 OS=Mus musculus GN=Stx2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.401e-13
Identity = 57/205 (27.80%), Postives = 101/205 (49.27%), Query Frame = 3
Query:  129 IKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVD-RSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIM-DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR--KWM 731
            IK+ +E    E+ K +  I+ K++ +++    S  +   G  T VD R R      L +KF D M E+    + + +              G+   ++ +++++E+G         I +    QI    L EI+ RH  +  LE  + EL ++F+DMA+ V+ QG+M++NIE  V ++VD+V+      +KA K Q  +R  KW+
Sbjct:   71 IKEELEDLDKEIKKTANRIRGKLKSIEQ----SCDQDENGNRTSVDLRIRRTQHSVLSRKFVDVMTEYNEA-QILFRERSKGRIQRQLEITGRTTTDDELEEMLESGKPSIFISDIISDS---QITRQALNEIESRHKDIMKLETSIRELHEMFMDMAMFVETQGEMVNNIERNVVNSVDYVEHAKEETKKAIKYQSKARRKKWI 267          
The following BLAST results are available for this feature:
BLAST of CX047113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
STX1A_DROME1.146e-1523.97Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE... [more]
STX1A_RAT1.954e-1525.25Syntaxin-1A OS=Rattus norvegicus GN=Stx1a PE=1 SV=... [more]
STX1A_PONAB1.954e-1525.25Syntaxin-1A OS=Pongo abelii GN=STX1A PE=2 SV=1[more]
STX1A_HUMAN1.954e-1525.25Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1[more]
STX1A_MOUSE2.553e-1525.25Syntaxin-1A OS=Mus musculus GN=Stx1a PE=1 SV=3[more]
STX1A_BOVIN4.354e-1524.75Syntaxin-1A OS=Bos taurus GN=STX1A PE=1 SV=1[more]
STX12_MOUSE1.267e-1431.29Syntaxin-12 OS=Mus musculus GN=Stx12 PE=1 SV=1[more]
STX2_HUMAN6.287e-1427.32Syntaxin-2 OS=Homo sapiens GN=STX2 PE=1 SV=2[more]
STX2_RAT8.211e-1428.29Syntaxin-2 OS=Rattus norvegicus GN=Stx2 PE=2 SV=2[more]
STX2_MOUSE1.401e-1327.80Syntaxin-2 OS=Mus musculus GN=Stx2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12B11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B11-C21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047113 ID=CX047113; Name=CX047113; organism=Citrus sinensis; type=EST; length=824bp
TGGAAAATTTCTTTAAAAAGGTTCAAGATATTGACAAAGAATATGAGAAG
TTGGAGAAACTACTCAAAAAGCTACAGGGTGCACATGAGGAGTCAAAGTC
TGTAACCAAGGCTCCTGCCATGAAAGCAATCAAGAAGCGAATGGAGAAAG
ATGTTGATGAAGTTGGGAAAATTTCTCGTTTCATAAAGTCGAAGATTGAA
GAACTGGATAGAGAGAATTTAACAAGTAGGCAGAAGCCTGGCTGTGGAAA
AGGAACAGGAGTAGATCGATCAAGAACAGCAACAACTCTTGGCTTGAAAA
AGAAGTTCAAAGACAAAATGGGTGAATTTCAGGTTCTAAGGGAAAACATC
CATCAAGAGTATCGAGAGGTGGTGGAGAGGCGAGTTTATACAGTAACCGG
CAAAAGGGCTGATGAAGAGACAATTGACCAATTGATTGAGACCGGGGACA
GTGAACAGATATTCCAGAAAGCAATCCAAGAACAAGGTCGAGGCCAGATA
ATGGACACTCTGGCTGAAATTCAAGAACGCCATGATGCCGTTAGAGATTT
GGAAAGGAAGCTTCTTGAGTTACAACAGATCTTTCTGGATATGGCGGTGT
TGGTAGATGCACAGGGAGACATGCTGGACAATATAGAATCTCAGGTGTCA
AGTGCTGTAGATCACGTGCAGTCAGGCAATACTGCCCTCCAAAAGGCGAA
AAAGCTACAGAAGAACTCCAGGAAATGGATGTGCATTGCCATCATCATCC
TTCTCATCATTGTTGCAATCATAGTTGTTGCGGTAATCAAGCCATGGAGT
AGCAACAAAGGTGCTTAGCTGCTC
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