CX047113

Overview
NameCX047113
Unique NameCX047113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: PSY1_SCHPO (Syntaxin-like protein psy1 OS=Schizosaccharomyces pombe GN=psy1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.186e-12
Identity = 57/245 (23.27%), Postives = 104/245 (42.45%), Query Frame = 3
Query:    9 FFKKVQDIDXXXXXXXXXXXXXQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGR-GQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR--KWMC 734
            FF+++  I              +  H++S        + A  + +E    +  ++   ++  I  L+ +N+  +  P     T     R   T  +KKKF D++  F  + E  ++                RA E+     I   +  Q+F +A+    R G+    L E+QERH  ++ +ER + EL Q+F DMA +V  Q  M+D I +   +   ++  G   + +A K  + +R  KW+C
Sbjct:   21 FFEEIDHIRDAIRQIEDNVGRIEMLHQQSLQEIDEANIAATTRHLEGYTSDTRRLQTSVQLAIRSLESQNM--QLPPDNDTAT-----RKTQTEAVKKKFMDQIRHFLQI-EKTYRAQYEQRMRRQLEIANPRATEDDFQTAINEENGGQVFAQALLRSNRSGEARTALREVQERHADIKRIERTIAELAQLFQDMATMVQEQEPMVDKIVTDAVNVRTNMGEGTQHMDRAIKSARAARKKKWIC 257          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX1A_CAEBR (Syntaxin-1A OS=Caenorhabditis briggsae GN=unc-64 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12
Identity = 56/241 (23.24%), Postives = 113/241 (46.89%), Query Frame = 3
Query:    3 ENFFKKVQDIDXXXXXXXXXXXXXQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 725
            E FF++V++I              +  H  S  ++     +  K+ +++ +  + + +  ++ K++ +  EN     +   G G    R R      L ++F + M ++   + + ++              GK+  +E ++++IE+G+     Q  I +    Q   TLA+I+ RH+ +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  A + V       +KA + Q  +R+
Sbjct:   33 EEFFEQVEEIRGSVDIIANNVEEVKKKH--SAILSNPVNDQKTKEELDELMAVIKRAANKVRGKLKLI--ENAIEHDENQQGAGNADLRIRKTQHSTLSRRFVEVMTDYNKTQTD-YRERCKGRIQRQLDIAGKQVGDEDLEEMIESGNPGVFTQGIITDTQ--QAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQSKARR 266          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX7_MOUSE (Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.450e-12
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 3
Query:  465 QKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 734
            Q  +Q Q      D L  I ER  ++R LE  ++++ +IF D+ +++  QGDM+D+IE+ V SA  HVQ  N  L +A   Q+ SRK +C
Sbjct:  150 QPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDMIDSIEANVESAEVHVQQANQQLSRAADYQRKSRKTLC 239          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX1A_CAEEL (Syntaxin-1A homolog OS=Caenorhabditis elegans GN=unc-64 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.450e-12
Identity = 56/241 (23.24%), Postives = 114/241 (47.30%), Query Frame = 3
Query:    3 ENFFKKVQDIDXXXXXXXXXXXXXQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 725
            E FF++V++I              +  H  S  ++     +  K+ +++ +  + + +  ++ K++ +  EN     + G G      R    +TL   ++F + M ++   + + ++              GK+  +E ++++IE+G+     Q  I +    Q   TLA+I+ RH+ +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  A + V       +KA + Q  +R+
Sbjct:   33 EEFFEQVEEIRGSVDIIANNVEEVKKKH--SAILSNPVNDQKTKEELDELMAVIKRAANKVRGKLKLI--ENAIDHDEQGAGNADLRIRKTQHSTLS--RRFVEVMTDYNKTQTD-YRERCKGRIQRQLDIAGKQVGDEDLEEMIESGNPGVFTQGIITDTQ--QAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQSKARR 264          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX7_RAT (Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 7.685e-12
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 3
Query:  465 QKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 734
            Q  +Q Q      D L  I ER  ++R LE  ++++ +IF D+ +++  QGD++D+IE+ V SA  HVQ  N  L +A   Q+ SRK +C
Sbjct:  150 QPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAANYQRKSRKTLC 239          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX7_PONAB (Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = 3
Query:  465 QKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 734
            Q  +Q Q      D L  I ER  ++R LE  ++++ +IF D+ +++  QGD++D+IE+ V +A  HVQ  N  L +A   Q+ SRK +C
Sbjct:  150 QPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKSRKTLC 239          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX7_HUMAN (Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = 3
Query:  465 QKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 734
            Q  +Q Q      D L  I ER  ++R LE  ++++ +IF D+ +++  QGD++D+IE+ V +A  HVQ  N  L +A   Q+ SRK +C
Sbjct:  150 QPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKSRKTLC 239          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: STX7_BOVIN (Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  504 DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 734
            D L  IQER  ++R LE  ++++ +IF D+ +++  QGD++D+IE+ V +A  HVQ  N  L +A   Q+ SRK +C
Sbjct:  163 DDLRLIQERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKSRKTLC 239          
BLAST of CX047113 vs. ExPASy Swiss-Prot
Match: SSO2_YEAST (Protein SSO2 OS=Saccharomyces cerevisiae GN=SSO2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 52/241 (21.58%), Postives = 102/241 (42.32%), Query Frame = 3
Query:    9 FFKKVQDIDXXXXXXXXXXXXXQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGR-GQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSG----NTALQKAKKLQKN 716
            F  K+  I+                H++  +         +++ ++  + +   +   +K+ I++  R+ L              D ++ A     ++KF   + +++++  N  +               +  DEE ++  I   + +QIF +A+    R G+    LAE+Q RH  +  LE+ + EL Q+F DM  LV  Q + +D I+  V  A   V+ G    N A++ A+K +KN
Sbjct:   40 FMNKINSINANLSRYENIINQIDAQHKDLLTQVSEEQEMELRRSLDDYISQATDLQYQLKADIKDAQRDGLH-------------DSNKQAQAENCRQKFLKLIQDYRIIDSNYKEESKEQAKRQYTIIQPEATDEE-VEAAINDVNGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQQDVEQGVGHTNKAVKSARKARKN 266          
The following BLAST results are available for this feature:
BLAST of CX047113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PSY1_SCHPO1.186e-1223.27Syntaxin-like protein psy1 OS=Schizosaccharomyces ... [more]
STX1A_CAEBR1.549e-1223.24Syntaxin-1A OS=Caenorhabditis briggsae GN=unc-64 P... [more]
STX7_MOUSE3.450e-1238.89Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3[more]
STX1A_CAEEL3.450e-1223.24Syntaxin-1A homolog OS=Caenorhabditis elegans GN=u... [more]
STX7_RAT7.685e-1237.78Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4[more]
STX7_PONAB2.236e-1136.67Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3[more]
STX7_HUMAN2.236e-1136.67Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4[more]
STX7_BOVIN2.236e-1140.26Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1[more]
SSO2_YEAST6.506e-1121.58Protein SSO2 OS=Saccharomyces cerevisiae GN=SSO2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12B11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B11-C21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047113 ID=CX047113; Name=CX047113; organism=Citrus sinensis; type=EST; length=824bp
TGGAAAATTTCTTTAAAAAGGTTCAAGATATTGACAAAGAATATGAGAAG
TTGGAGAAACTACTCAAAAAGCTACAGGGTGCACATGAGGAGTCAAAGTC
TGTAACCAAGGCTCCTGCCATGAAAGCAATCAAGAAGCGAATGGAGAAAG
ATGTTGATGAAGTTGGGAAAATTTCTCGTTTCATAAAGTCGAAGATTGAA
GAACTGGATAGAGAGAATTTAACAAGTAGGCAGAAGCCTGGCTGTGGAAA
AGGAACAGGAGTAGATCGATCAAGAACAGCAACAACTCTTGGCTTGAAAA
AGAAGTTCAAAGACAAAATGGGTGAATTTCAGGTTCTAAGGGAAAACATC
CATCAAGAGTATCGAGAGGTGGTGGAGAGGCGAGTTTATACAGTAACCGG
CAAAAGGGCTGATGAAGAGACAATTGACCAATTGATTGAGACCGGGGACA
GTGAACAGATATTCCAGAAAGCAATCCAAGAACAAGGTCGAGGCCAGATA
ATGGACACTCTGGCTGAAATTCAAGAACGCCATGATGCCGTTAGAGATTT
GGAAAGGAAGCTTCTTGAGTTACAACAGATCTTTCTGGATATGGCGGTGT
TGGTAGATGCACAGGGAGACATGCTGGACAATATAGAATCTCAGGTGTCA
AGTGCTGTAGATCACGTGCAGTCAGGCAATACTGCCCTCCAAAAGGCGAA
AAAGCTACAGAAGAACTCCAGGAAATGGATGTGCATTGCCATCATCATCC
TTCTCATCATTGTTGCAATCATAGTTGTTGCGGTAATCAAGCCATGGAGT
AGCAACAAAGGTGCTTAGCTGCTC
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