CX047100

Overview
NameCX047100
Unique NameCX047100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_SOYBN (50S ribosomal protein L16, chloroplastic OS=Glycine max GN=rpl16 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.827e-43
Identity = 81/86 (94.19%), Postives = 86/86 (100.00%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +P+RTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAM+RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    3 SPQRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_LIRTU (50S ribosomal protein L16, chloroplastic OS=Liriodendron tulipifera GN=rpl16 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.998e-43
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 3
Query:  576 PKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            PKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTR  RRGGKIWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    2 PKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRYARRGGKIWVRIFPDKPVTVRPTETRMGSGKG 86          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_GOSHI (50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.998e-43
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKR RFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    3 SPKRNRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CHLSC (50S ribosomal protein L16, chloroplastic OS=Chloranthus spicatus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.998e-43
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            NPKRTRFRKQHRGRMKGISYRGN+ICFGRYALQALEPAWITSRQIEAGRRAMTR  RRGGKIWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    4 NPKRTRFRKQHRGRMKGISYRGNNICFGRYALQALEPAWITSRQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPTETRMGSGKG 89          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CARPA (50S ribosomal protein L16, chloroplastic OS=Carica papaya GN=rpl16 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.998e-43
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGR+KGISYRGN ICFGRYALQALEP WITSRQIEAGRRAMTRN+RRGGKIWVRIFPDKPVTLRPTETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRLKGISYRGNRICFGRYALQALEPTWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CALFG (50S ribosomal protein L16, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.525e-43
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEP+WITSRQIEAGRRAMTR  RRGGKIWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPSWITSRQIEAGRRAMTRYARRGGKIWVRIFPDKPVTVRPTETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_MANES (50S ribosomal protein L16, chloroplastic OS=Manihot esculenta GN=rpl16 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.113e-42
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKGI++RGN ICFGRYALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTLRPTETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGIAFRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_SPIOL (50S ribosomal protein L16, chloroplastic OS=Spinacia oleracea GN=rpl16 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.454e-42
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CUSEX (50S ribosomal protein L16, plastid OS=Cuscuta exaltata GN=rpl16 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.454e-42
Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRG++KGISYRGNHICFGRYALQALEPAW+TSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGKLKGISYRGNHICFGRYALQALEPAWLTSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CUCSA (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.454e-42
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRK HRGRMKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTLRPTETRMGSGKG
Sbjct:    3 SPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKG 88          
The following BLAST results are available for this feature:
BLAST of CX047100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_SOYBN3.827e-4394.1950S ribosomal protein L16, chloroplastic OS=Glycin... [more]
RK16_LIRTU4.998e-4396.4750S ribosomal protein L16, chloroplastic OS=Liriod... [more]
RK16_GOSHI4.998e-4395.3550S ribosomal protein L16, chloroplastic OS=Gossyp... [more]
RK16_CHLSC4.998e-4395.3550S ribosomal protein L16, chloroplastic OS=Chlora... [more]
RK16_CARPA4.998e-4394.1950S ribosomal protein L16, chloroplastic OS=Carica... [more]
RK16_CALFG8.525e-4394.1950S ribosomal protein L16, chloroplastic OS=Calyca... [more]
RK16_MANES1.113e-4294.1950S ribosomal protein L16, chloroplastic OS=Maniho... [more]
RK16_SPIOL1.454e-4294.1950S ribosomal protein L16, chloroplastic OS=Spinac... [more]
RK16_CUSEX1.454e-4291.8650S ribosomal protein L16, plastid OS=Cuscuta exal... [more]
RK16_CUCSA1.454e-4294.1950S ribosomal protein L16, chloroplastic OS=Cucumi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12B05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B05-C9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047100 ID=CX047100; Name=CX047100; organism=Citrus sinensis; type=EST; length=830bp
CTCCGTTGGAGAATTCAGACCTAACCATTAATCGAGAAGCAATGGGAACG
ACGGAACCCGTGAATAAAGAAAAAGAAGATTCTATTGGAAATGAATCTTA
ATGATTTATTGGGTGGGATGGCGAAACGAACCCAGGAACTAAACTATTCT
TTTATTCGTAGAGGTCATGAACTAACCCTACAACTGAAATAGATATTGAA
AGAGTAAATATTCGCCCGCGAAAGGTTTATTTTTTGATTTTATTGGATTG
ATTCATTTTGCTCGATCCGATATGGTAAAGGGCAAAACAAAATAAAGATT
TGTTATAACGATAAAAAAAAAAAGACATTGAGATTATCTATAAATAGAAC
ATAAATGTTTCAATTCTATATCTAAACATGATATACAAATTTAGAATAGA
TTAATTAGATGAACTTTCAAAAAATCCTATGCTTCAGTATATTATTCATT
AAATTCCCCTATATCTTGATAAAATCGTTTTTAGTCCTTTCATTCGCGAG
GAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGATGGCA
TTGAGAAAGAACCATCAATTATAACCCCAAAAGAACAAGATTCCGTAAAC
AACATAGAGGAAGAATGAAAGGGATATCTTATCGAGGTAATCATATTTGT
TTCGGCAGATATGCTCTTCAAGCACTTGAACCCGCTTGGATCACATCTAG
ACAAATCGAAGCGGGGCGCCGCGCAATGACACGAAATGTACGGCGCGGTG
GAAAAATATGGGTACGTATCTTTCCAGACAAACCCGTTACACTAAGACCC
ACGGAAACCCGTATGGGGTCCGGTAAAGGA
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