CX047100

Overview
NameCX047100
Unique NameCX047100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_POPTR (50S ribosomal protein L16, chloroplastic OS=Populus trichocarpa GN=rpl16 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.899e-42
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKGIS RGN ICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRP+ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGISSRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPSETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_POPAL (50S ribosomal protein L16, chloroplastic OS=Populus alba GN=rpl16 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.899e-42
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKGIS RGN ICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRP+ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGISSRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPSETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_DRIGR (50S ribosomal protein L16, chloroplastic OS=Drimys granadensis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.899e-42
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKGISYRGN+ICFGRYALQALEPAWITSRQIEAGRRAMTR  RRGGKIWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNYICFGRYALQALEPAWITSRQIEAGRRAMTRYARRGGKIWVRIFPDKPVTVRPTETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_FAGEA (50S ribosomal protein L16, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl16 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.480e-42
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRN RRGGK+WVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKLWVRIFPDKPVTVRPAETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_BUXMI (50S ribosomal protein L16, chloroplastic OS=Buxus microphylla GN=rpl16 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.480e-42
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            NPKRTRFRKQHRGRMKGISYRGN ICFGRYALQALEP WITSRQIEAGRRAMTR  RRGGKIWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    4 NPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPTWITSRQIEAGRRAMTRYARRGGKIWVRIFPDKPVTVRPTETRMGSGKG 89
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_ATRBE (50S ribosomal protein L16, chloroplastic OS=Atropa belladonna GN=rpl16 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.480e-42
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKGISYRGNHI FG+YALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTLRP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNHISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPAETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_NUPAD (50S ribosomal protein L16, chloroplastic OS=Nuphar advena GN=rpl16 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.239e-42
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKG+SYRGNHICFGRYALQALEPAWITSRQIEAGRRAM R  RRGGKIWVRIFPDKPVTLRP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGVSYRGNHICFGRYALQALEPAWITSRQIEAGRRAMARYARRGGKIWVRIFPDKPVTLRPAETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_AETGR (50S ribosomal protein L16, chloroplastic OS=Aethionema grandiflora GN=rpl16 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.239e-42
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGR+KGISYRGN ICFGRYALQ LEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRLKGISYRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_AETCO (50S ribosomal protein L16, chloroplastic OS=Aethionema cordifolium GN=rpl16 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.239e-42
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGR+KGISYRGN ICFGRYALQ LEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRLKGISYRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_LOTJA (50S ribosomal protein L16, chloroplastic OS=Lotus japonicus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.231e-42
Identity = 80/86 (93.02%), Postives = 85/86 (98.84%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKGIS+RGN ICFGRYALQALEPAWITSRQIEAGRRAM+RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGISHRGNQICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKG 88
The following BLAST results are available for this feature:
BLAST of CX047100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_POPTR1.899e-4295.3550S ribosomal protein L16, chloroplastic OS=Populu... [more]
RK16_POPAL1.899e-4295.3550S ribosomal protein L16, chloroplastic OS=Populu... [more]
RK16_DRIGR1.899e-4294.1950S ribosomal protein L16, chloroplastic OS=Drimys... [more]
RK16_FAGEA2.480e-4293.0250S ribosomal protein L16, chloroplastic OS=Fagopy... [more]
RK16_BUXMI2.480e-4294.1950S ribosomal protein L16, chloroplastic OS=Buxus ... [more]
RK16_ATRBE2.480e-4294.1950S ribosomal protein L16, chloroplastic OS=Atropa... [more]
RK16_NUPAD3.239e-4293.0250S ribosomal protein L16, chloroplastic OS=Nuphar... [more]
RK16_AETGR3.239e-4293.0250S ribosomal protein L16, chloroplastic OS=Aethio... [more]
RK16_AETCO3.239e-4293.0250S ribosomal protein L16, chloroplastic OS=Aethio... [more]
RK16_LOTJA4.231e-4293.0250S ribosomal protein L16, chloroplastic OS=Lotus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12B05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B05-C9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047100 ID=CX047100; Name=CX047100; organism=Citrus sinensis; type=EST; length=830bp
CTCCGTTGGAGAATTCAGACCTAACCATTAATCGAGAAGCAATGGGAACG
ACGGAACCCGTGAATAAAGAAAAAGAAGATTCTATTGGAAATGAATCTTA
ATGATTTATTGGGTGGGATGGCGAAACGAACCCAGGAACTAAACTATTCT
TTTATTCGTAGAGGTCATGAACTAACCCTACAACTGAAATAGATATTGAA
AGAGTAAATATTCGCCCGCGAAAGGTTTATTTTTTGATTTTATTGGATTG
ATTCATTTTGCTCGATCCGATATGGTAAAGGGCAAAACAAAATAAAGATT
TGTTATAACGATAAAAAAAAAAAGACATTGAGATTATCTATAAATAGAAC
ATAAATGTTTCAATTCTATATCTAAACATGATATACAAATTTAGAATAGA
TTAATTAGATGAACTTTCAAAAAATCCTATGCTTCAGTATATTATTCATT
AAATTCCCCTATATCTTGATAAAATCGTTTTTAGTCCTTTCATTCGCGAG
GAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGATGGCA
TTGAGAAAGAACCATCAATTATAACCCCAAAAGAACAAGATTCCGTAAAC
AACATAGAGGAAGAATGAAAGGGATATCTTATCGAGGTAATCATATTTGT
TTCGGCAGATATGCTCTTCAAGCACTTGAACCCGCTTGGATCACATCTAG
ACAAATCGAAGCGGGGCGCCGCGCAATGACACGAAATGTACGGCGCGGTG
GAAAAATATGGGTACGTATCTTTCCAGACAAACCCGTTACACTAAGACCC
ACGGAAACCCGTATGGGGTCCGGTAAAGGA
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