CX047100

Overview
NameCX047100
Unique NameCX047100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_OENBI (50S ribosomal protein L16, chloroplastic OS=Oenothera biennis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRM+GISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRNVRRGGK WVRIFPDKPVTLR  ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMRGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGGKTWVRIFPDKPVTLRAAETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_OENAR (50S ribosomal protein L16, chloroplastic OS=Oenothera argillicola GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRM+GISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRNVRRGGK WVRIFPDKPVTLR  ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMRGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGGKTWVRIFPDKPVTLRAAETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_NASOF (50S ribosomal protein L16, chloroplastic OS=Nasturtium officinale GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGR+KGIS RGN ICFGRYALQ LEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_LOBMA (50S ribosomal protein L16, chloroplastic OS=Lobularia maritima GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGR+KGIS RGN ICFGRYALQ LEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_DRANE (50S ribosomal protein L16, chloroplastic OS=Draba nemorosa GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGR+KGIS RGN ICFGRYALQ LEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CRUWA (50S ribosomal protein L16, chloroplastic OS=Crucihimalaya wallichii GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGR+KGIS RGN ICFGRYALQ LEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CERDE (50S ribosomal protein L16, chloroplastic OS=Ceratophyllum demersum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKGIS RGN ICFGRYALQALEPAWITSRQIEAGRRAMTR  RRGGKIWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGISSRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRYARRGGKIWVRIFPDKPVTVRPTETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CAPBU (50S ribosomal protein L16, chloroplastic OS=Capsella bursa-pastoris GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGR+KGIS RGN ICFGRYALQ LEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_BARVE (50S ribosomal protein L16, chloroplastic OS=Barbarea verna GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGR+KGIS RGN ICFGRYALQ LEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKG 88
[Close]
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_ARATH (50S ribosomal protein L16, chloroplastic OS=Arabidopsis thaliana GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 3 
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGR+KGIS RGN ICFGRYALQ LEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKG 88
The following BLAST results are available for this feature:
BLAST of CX047100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_OENBI3.582e-4191.8650S ribosomal protein L16, chloroplastic OS=Oenoth... [more]
RK16_OENAR3.582e-4191.8650S ribosomal protein L16, chloroplastic OS=Oenoth... [more]
RK16_NASOF3.582e-4191.8650S ribosomal protein L16, chloroplastic OS=Nastur... [more]
RK16_LOBMA3.582e-4191.8650S ribosomal protein L16, chloroplastic OS=Lobula... [more]
RK16_DRANE3.582e-4191.8650S ribosomal protein L16, chloroplastic OS=Draba ... [more]
RK16_CRUWA3.582e-4191.8650S ribosomal protein L16, chloroplastic OS=Crucih... [more]
RK16_CERDE3.582e-4193.0250S ribosomal protein L16, chloroplastic OS=Cerato... [more]
RK16_CAPBU3.582e-4191.8650S ribosomal protein L16, chloroplastic OS=Capsel... [more]
RK16_BARVE3.582e-4191.8650S ribosomal protein L16, chloroplastic OS=Barbar... [more]
RK16_ARATH3.582e-4191.8650S ribosomal protein L16, chloroplastic OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12B05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B05-C9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047100 ID=CX047100; Name=CX047100; organism=Citrus sinensis; type=EST; length=830bp
CTCCGTTGGAGAATTCAGACCTAACCATTAATCGAGAAGCAATGGGAACG
ACGGAACCCGTGAATAAAGAAAAAGAAGATTCTATTGGAAATGAATCTTA
ATGATTTATTGGGTGGGATGGCGAAACGAACCCAGGAACTAAACTATTCT
TTTATTCGTAGAGGTCATGAACTAACCCTACAACTGAAATAGATATTGAA
AGAGTAAATATTCGCCCGCGAAAGGTTTATTTTTTGATTTTATTGGATTG
ATTCATTTTGCTCGATCCGATATGGTAAAGGGCAAAACAAAATAAAGATT
TGTTATAACGATAAAAAAAAAAAGACATTGAGATTATCTATAAATAGAAC
ATAAATGTTTCAATTCTATATCTAAACATGATATACAAATTTAGAATAGA
TTAATTAGATGAACTTTCAAAAAATCCTATGCTTCAGTATATTATTCATT
AAATTCCCCTATATCTTGATAAAATCGTTTTTAGTCCTTTCATTCGCGAG
GAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGATGGCA
TTGAGAAAGAACCATCAATTATAACCCCAAAAGAACAAGATTCCGTAAAC
AACATAGAGGAAGAATGAAAGGGATATCTTATCGAGGTAATCATATTTGT
TTCGGCAGATATGCTCTTCAAGCACTTGAACCCGCTTGGATCACATCTAG
ACAAATCGAAGCGGGGCGCCGCGCAATGACACGAAATGTACGGCGCGGTG
GAAAAATATGGGTACGTATCTTTCCAGACAAACCCGTTACACTAAGACCC
ACGGAAACCCGTATGGGGTCCGGTAAAGGA
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