CX047100

Overview
NameCX047100
Unique NameCX047100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_LOLPR (50S ribosomal protein L16, chloroplastic OS=Lolium perenne GN=rpl16 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.755e-40
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKG S RGN ICFGRYALQALEPAWIT+RQIEAGRRA+TR  RRGGKIWVRIFPDKPVTLRPTETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGKSCRGNRICFGRYALQALEPAWITARQIEAGRRAITRYARRGGKIWVRIFPDKPVTLRPTETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CUSOB (50S ribosomal protein L16, plastid OS=Cuscuta obtusiflora GN=rpl16 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.755e-40
Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PK+TRFR+QHRGRMKG+S RGN ICFG+Y LQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKKTRFRRQHRGRMKGLSSRGNQICFGKYGLQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTIRPAETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_AGRST (50S ribosomal protein L16, chloroplastic OS=Agrostis stolonifera GN=rpl16 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.755e-40
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKG S RGN ICFGRYALQALEPAWIT+RQIEAGRRA+TR  RRGGKIWVRIFPDKPVTLRPTETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGKSCRGNRICFGRYALQALEPAWITARQIEAGRRAITRYARRGGKIWVRIFPDKPVTLRPTETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CICAR (50S ribosomal protein L16, chloroplastic OS=Cicer arietinum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.505e-39
Identity = 75/86 (87.21%), Postives = 83/86 (96.51%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PK+TRFRKQHRGRMKG + RGN ICFG+YALQALEPAWITSRQIEAGRRAM+RNVRRGG+IW+RIFPDKPVT+RPTETRMGSGKG
Sbjct:    3 SPKKTRFRKQHRGRMKGKACRGNKICFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWIRIFPDKPVTVRPTETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_LEMMI (50S ribosomal protein L16, chloroplastic OS=Lemna minor GN=rpl16 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.567e-39
Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKG SYRGNHI FGRYALQALEP+WIT+RQIEAGRRA++R  RRGGKIWVR+FPDKPVTLRP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGTSYRGNHISFGRYALQALEPSWITARQIEAGRRAISRYARRGGKIWVRLFPDKPVTLRPAETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CUSGR (50S ribosomal protein L16, plastid OS=Cuscuta gronovii GN=rpl16 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.567e-39
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PK+TRFR+QHRGRMKG++ RGNHI FG+Y LQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    3 SPKKTRFRRQHRGRMKGLASRGNHISFGKYGLQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTIRPAETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_BRADI (50S ribosomal protein L16, chloroplastic OS=Brachypodium distachyon GN=rpl16 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.378e-39
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRT+FRKQHRGRMKG S RGN ICFGRYALQALEP WIT+RQIEAGRRA+TR  RRGGKIWVRIFPDKPVTLRPTETRMGSGKG
Sbjct:    3 SPKRTKFRKQHRGRMKGKSCRGNRICFGRYALQALEPTWITARQIEAGRRAITRYARRGGKIWVRIFPDKPVTLRPTETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_PINKO (50S ribosomal protein L16, chloroplastic OS=Pinus koraiensis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.718e-39
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRT+FRKQHRGRMKG+SYRGN ICFGR+ALQALEPAWITS QIEAGRR +TR  RRGGKIWVRIFPDKP+T+RP ETRMGSGKG
Sbjct:    3 SPKRTKFRKQHRGRMKGVSYRGNRICFGRFALQALEPAWITSGQIEAGRRTITRYARRGGKIWVRIFPDKPITMRPAETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_PINTH (50S ribosomal protein L16, chloroplastic OS=Pinus thunbergii GN=rpl16 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.173e-38
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRT+FRKQHRGRMKG+SYRGN ICFGR+ALQALEPAWITS QIEAGRR + R  RRGGKIWVRIFPDKP+T+RP ETRMGSGKG
Sbjct:    3 SPKRTKFRKQHRGRMKGVSYRGNRICFGRFALQALEPAWITSGQIEAGRRTINRYARRGGKIWVRIFPDKPITMRPAETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_ZYGCR (50S ribosomal protein L16, chloroplastic OS=Zygnema circumcarinatum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.706e-38
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGR+KGIS RGN ICFGR+ LQALEP+WITSRQIEAGRRA+TR  RRGGK+W+RIFPDKP+T+RP ETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRLKGISTRGNRICFGRFGLQALEPSWITSRQIEAGRRAITRYARRGGKLWIRIFPDKPITMRPAETRMGSGKG 88          
The following BLAST results are available for this feature:
BLAST of CX047100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_LOLPR6.755e-4090.7050S ribosomal protein L16, chloroplastic OS=Lolium... [more]
RK16_CUSOB6.755e-4087.2150S ribosomal protein L16, plastid OS=Cuscuta obtu... [more]
RK16_AGRST6.755e-4090.7050S ribosomal protein L16, chloroplastic OS=Agrost... [more]
RK16_CICAR1.505e-3987.2150S ribosomal protein L16, chloroplastic OS=Cicer ... [more]
RK16_LEMMI2.567e-3987.2150S ribosomal protein L16, chloroplastic OS=Lemna ... [more]
RK16_CUSGR2.567e-3986.0550S ribosomal protein L16, plastid OS=Cuscuta gron... [more]
RK16_BRADI4.378e-3988.3750S ribosomal protein L16, chloroplastic OS=Brachy... [more]
RK16_PINKO5.718e-3984.8850S ribosomal protein L16, chloroplastic OS=Pinus ... [more]
RK16_PINTH2.173e-3883.7250S ribosomal protein L16, chloroplastic OS=Pinus ... [more]
RK16_ZYGCR3.706e-3882.5650S ribosomal protein L16, chloroplastic OS=Zygnem... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_12B05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B05-C9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047100 ID=CX047100; Name=CX047100; organism=Citrus sinensis; type=EST; length=830bp
CTCCGTTGGAGAATTCAGACCTAACCATTAATCGAGAAGCAATGGGAACG
ACGGAACCCGTGAATAAAGAAAAAGAAGATTCTATTGGAAATGAATCTTA
ATGATTTATTGGGTGGGATGGCGAAACGAACCCAGGAACTAAACTATTCT
TTTATTCGTAGAGGTCATGAACTAACCCTACAACTGAAATAGATATTGAA
AGAGTAAATATTCGCCCGCGAAAGGTTTATTTTTTGATTTTATTGGATTG
ATTCATTTTGCTCGATCCGATATGGTAAAGGGCAAAACAAAATAAAGATT
TGTTATAACGATAAAAAAAAAAAGACATTGAGATTATCTATAAATAGAAC
ATAAATGTTTCAATTCTATATCTAAACATGATATACAAATTTAGAATAGA
TTAATTAGATGAACTTTCAAAAAATCCTATGCTTCAGTATATTATTCATT
AAATTCCCCTATATCTTGATAAAATCGTTTTTAGTCCTTTCATTCGCGAG
GAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGATGGCA
TTGAGAAAGAACCATCAATTATAACCCCAAAAGAACAAGATTCCGTAAAC
AACATAGAGGAAGAATGAAAGGGATATCTTATCGAGGTAATCATATTTGT
TTCGGCAGATATGCTCTTCAAGCACTTGAACCCGCTTGGATCACATCTAG
ACAAATCGAAGCGGGGCGCCGCGCAATGACACGAAATGTACGGCGCGGTG
GAAAAATATGGGTACGTATCTTTCCAGACAAACCCGTTACACTAAGACCC
ACGGAAACCCGTATGGGGTCCGGTAAAGGA
back to top