CX047100
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_LOLPR (50S ribosomal protein L16, chloroplastic OS=Lolium perenne GN=rpl16 PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 6.755e-40 Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PKRTRFRKQHRGRMKG S RGN ICFGRYALQALEPAWIT+RQIEAGRRA+TR RRGGKIWVRIFPDKPVTLRPTETRMGSGKG Sbjct: 3 SPKRTRFRKQHRGRMKGKSCRGNRICFGRYALQALEPAWITARQIEAGRRAITRYARRGGKIWVRIFPDKPVTLRPTETRMGSGKG 88
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CUSOB (50S ribosomal protein L16, plastid OS=Cuscuta obtusiflora GN=rpl16 PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 6.755e-40 Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PK+TRFR+QHRGRMKG+S RGN ICFG+Y LQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKG Sbjct: 3 SPKKTRFRRQHRGRMKGLSSRGNQICFGKYGLQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTIRPAETRMGSGKG 88
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_AGRST (50S ribosomal protein L16, chloroplastic OS=Agrostis stolonifera GN=rpl16 PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 6.755e-40 Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PKRTRFRKQHRGRMKG S RGN ICFGRYALQALEPAWIT+RQIEAGRRA+TR RRGGKIWVRIFPDKPVTLRPTETRMGSGKG Sbjct: 3 SPKRTRFRKQHRGRMKGKSCRGNRICFGRYALQALEPAWITARQIEAGRRAITRYARRGGKIWVRIFPDKPVTLRPTETRMGSGKG 88
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CICAR (50S ribosomal protein L16, chloroplastic OS=Cicer arietinum GN=rpl16 PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.505e-39 Identity = 75/86 (87.21%), Postives = 83/86 (96.51%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PK+TRFRKQHRGRMKG + RGN ICFG+YALQALEPAWITSRQIEAGRRAM+RNVRRGG+IW+RIFPDKPVT+RPTETRMGSGKG Sbjct: 3 SPKKTRFRKQHRGRMKGKACRGNKICFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWIRIFPDKPVTVRPTETRMGSGKG 88
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_LEMMI (50S ribosomal protein L16, chloroplastic OS=Lemna minor GN=rpl16 PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.567e-39 Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PKRTRFRKQHRGRMKG SYRGNHI FGRYALQALEP+WIT+RQIEAGRRA++R RRGGKIWVR+FPDKPVTLRP ETRMGSGKG Sbjct: 3 SPKRTRFRKQHRGRMKGTSYRGNHISFGRYALQALEPSWITARQIEAGRRAISRYARRGGKIWVRLFPDKPVTLRPAETRMGSGKG 88
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CUSGR (50S ribosomal protein L16, plastid OS=Cuscuta gronovii GN=rpl16 PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.567e-39 Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PK+TRFR+QHRGRMKG++ RGNHI FG+Y LQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKG Sbjct: 3 SPKKTRFRRQHRGRMKGLASRGNHISFGKYGLQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTIRPAETRMGSGKG 88
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_BRADI (50S ribosomal protein L16, chloroplastic OS=Brachypodium distachyon GN=rpl16 PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 4.378e-39 Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PKRT+FRKQHRGRMKG S RGN ICFGRYALQALEP WIT+RQIEAGRRA+TR RRGGKIWVRIFPDKPVTLRPTETRMGSGKG Sbjct: 3 SPKRTKFRKQHRGRMKGKSCRGNRICFGRYALQALEPTWITARQIEAGRRAITRYARRGGKIWVRIFPDKPVTLRPTETRMGSGKG 88
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_PINKO (50S ribosomal protein L16, chloroplastic OS=Pinus koraiensis GN=rpl16 PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 5.718e-39 Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PKRT+FRKQHRGRMKG+SYRGN ICFGR+ALQALEPAWITS QIEAGRR +TR RRGGKIWVRIFPDKP+T+RP ETRMGSGKG Sbjct: 3 SPKRTKFRKQHRGRMKGVSYRGNRICFGRFALQALEPAWITSGQIEAGRRTITRYARRGGKIWVRIFPDKPITMRPAETRMGSGKG 88
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_PINTH (50S ribosomal protein L16, chloroplastic OS=Pinus thunbergii GN=rpl16 PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.173e-38 Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PKRT+FRKQHRGRMKG+SYRGN ICFGR+ALQALEPAWITS QIEAGRR + R RRGGKIWVRIFPDKP+T+RP ETRMGSGKG Sbjct: 3 SPKRTKFRKQHRGRMKGVSYRGNRICFGRFALQALEPAWITSGQIEAGRRTINRYARRGGKIWVRIFPDKPITMRPAETRMGSGKG 88
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_ZYGCR (50S ribosomal protein L16, chloroplastic OS=Zygnema circumcarinatum GN=rpl16 PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.706e-38 Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PKRTRFRKQHRGR+KGIS RGN ICFGR+ LQALEP+WITSRQIEAGRRA+TR RRGGK+W+RIFPDKP+T+RP ETRMGSGKG Sbjct: 3 SPKRTRFRKQHRGRLKGISTRGNRICFGRFGLQALEPSWITSRQIEAGRRAITRYARRGGKLWIRIFPDKPITMRPAETRMGSGKG 88 The following BLAST results are available for this feature:
BLAST of CX047100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047100 ID=CX047100; Name=CX047100; organism=Citrus sinensis; type=EST; length=830bpback to top |