CX047028

Overview
NameCX047028
Unique NameCX047028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.477e-21
Identity = 73/268 (27.24%), Postives = 125/268 (46.64%), Query Frame = 3
Query:   81 PIIDLS-KLNGDERSAT--MEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSE-----VNDLDWESTFFLRHLPVSNMAEIPD-----LEDDYRKAMKEFA---VELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSD 836
            P+ID+   L+GD R+      ++ +ACE  GFF++VNHGI  ELL    R     +   + ++ + +          S       + L W+ T   R  P S+ A + D     L +D+R+  + +A    E+ +++                  ++ F G+       +++ YPPC +P    G   H D   + +L QD+ V GLQ+  + +W  + P   + V+N+GD    ++NG+YKS LHR +  ++  R S+A F  P  D
Sbjct:   40 PLIDIGGMLSGDPRATAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDAFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCP-SDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIM---RLNYYPPCQRPMETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMD 302          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.477e-21
Identity = 72/262 (27.48%), Postives = 126/262 (48.09%), Query Frame = 3
Query:   69 MENFPIIDLSKLNGDE---RSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDL------DWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIA-QTEGNRMSIASFYN 824
            ++  P IDL   +  +       +E I +A   WGFF+++NHG+S ELL+ ++   ++ + +  + R        G + +     DL      +W  TF+    P  +  E  DL +  R  M E++ ++  +                   K +    KG         +PPCP+PDL  G   H+D G  + +   D + GLQ+ ++  W DVP +  +++IN+GD L++ITN K+ S+ HRV+A +    R+S+A F++
Sbjct:   61 LKTIPTIDLGGRDFQDAIKHKNAIEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYSRDFGRKFIYLSNFDLYTAAAANWRDTFYCYMAP--DPPEPQDLPEICRDVMMEYSKQVMILGEFLFELLSEALGLNPNHLKDMEC-LKG--LRMLCHYFPPCPEPDLTFGTSKHSD-GSFLTVLLPDNIEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFH 316          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.342e-21
Identity = 68/256 (26.56%), Postives = 122/256 (47.66%), Query Frame = 3
Query:   81 PIIDLSKLNGDE---RSATMEMINDACENWGFFELVNHGISHELLDTV----QRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNP 827
            P+IDLS L   E   R   ++ +  A + WGFF++VNHGI  ++ + +    ++L  + +   + +RF  +  +       S  +   + S     H+ +S ++ I D  ++ R  ++ +  E+ +VA                  + +F          +++ Y P      + GL  HTD   + +L QD ++ GL+L  + QW+ V P   ++ +N+GD  + ++NG Y+SV HRVI+     RMSIA F  P
Sbjct:   41 PVIDLSHLTSGEEVKRKRCVKQMVAAAKEWGFFQIVNHGIPKDVFEMMLLEEKKLFDQPFSVKVRERFSDLSKNSYRWGNPSATSPAQY-SVSEAFHIILSEVSRISDDRNNLRTIVETYVQEIARVAQMICEILGKQVNVSSEYFENIFELENS---FLRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQD-QIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIERMSIAFFVCP 291          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.220e-20
Identity = 73/268 (27.24%), Postives = 120/268 (44.78%), Query Frame = 3
Query:   81 PIIDLSK-LNGDE--RSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGK---CMDQRFKQMVASKGLEA---VQSEVNDLDWESTFFLRHLPVSNM----------AEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNP 827
            P+IDL+  L+GD    S    +++ A    GFF + NHG+   LL     L  + + K   C  Q+ ++        A   V    + L W+ T   +  P   +           ++ D  +D+ K  +E+A  +  ++                  K+ F  S       +++ YP C +P+L  G   H D   + +L QD +V GLQ+  D++W  +PP  H+ V+N+GD    +TNG+YKS LHR +  +E  R + A F  P
Sbjct:   59 PLIDLAGFLSGDSCLASEATRLVSKAATKHGFFLITNHGVDESLLSRAY-LHMDSFFKAPACEKQKAQRKWGESSGYASSFVGRFSSKLPWKETLSFKFSPEEKIHSQTVKDFVSKKMGDGYEDFGKVYQEYAEAMNTLSLKIMELLGMSLGVERRYFKEFFEDSDSIF---RLNYYPQCKQPELALGTGPHCDPTSLTILHQD-QVGGLQVFVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERERKTFAFFLCP 321          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.594e-20
Identity = 73/268 (27.24%), Postives = 124/268 (46.27%), Query Frame = 3
Query:   81 PIIDLS-KLNGDERSAT--MEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSE-----VNDLDWESTFFLRHLPVSNMAEIPD-----LEDDYRKAMKEFA---VELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSD 836
            P+ID+   L+GD  +A     ++ +ACE  GFF++VNHGI  ELL    R     +   + ++ + +          S       + L W+ T   R  P S+ A + D     L +D+R+  + +A    E+ +++                  ++ F G+       +++ YPPC +P    G   H D   + +L QD+ V GLQ+  + +W  + P   + V+N+GD    ++NG+YKS LHR +  +   R S+A F  P  D
Sbjct:   40 PLIDIGGMLSGDPAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRHPGESCGYASSFTGRFASKLPWKETLSFRSCP-SDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIM---RLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMD 302          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.081e-20
Identity = 72/264 (27.27%), Postives = 125/264 (47.35%), Query Frame = 3
Query:   81 PIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVN---DLDWESTFFLRHLPVSNMAEI-PDL---EDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDL-------IKGLRAHTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNP 827
            P+ID+S  + + + A ++    ACE++GFF+++NHG+S EL+  ++  T + +   + +  K  VA        S++    D+ W     +     S    + P L      +R A++E+   + K+                          +      ++++YPPCP  +        + G   HTD   II + + +  SGLQ+ L D  W+ VPP   S   N+GD L+V+TNG++KSV HRV+A  + +R+S+  F  P
Sbjct:   19 PVIDMS--DPESKHALVK----ACEDFGFFKVINHGVSAELVSVLEHETVDFFS--LPKSEKTQVAGYPFGYGNSKIGRNGDVGWVEYLLMNANHDSGSGPLFPSLLKSPGTFRNALEEYTTSVRKMTFDVLEKITDGLGIKPRNTLSKLVSDQNTDSILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQ-IISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCKKSRVSMIYFAGP 273          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.637e-20
Identity = 72/268 (26.87%), Postives = 124/268 (46.27%), Query Frame = 3
Query:   81 PIIDLS-KLNGDERSAT--MEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSE-----VNDLDWESTFFLRHLPVSNMAEIPD-----LEDDYRKAMKEFA---VELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSD 836
            P+I++   L+GD  +A     ++ +ACE  GFF++VNHGI  ELL    R     +   + ++ + +          S       + L W+ T   R  P S+ A + D     L +D+R+  + +A    E+ +++                  ++ F G+       +++ YPPC +P    G   H D   + +L QD+ V GLQ+  + +W  + P   + V+N+GD    ++NG+YKS LHR +  +   R S+A F  P  D
Sbjct:   40 PLINIGGMLSGDAAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCP-SDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIM---RLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMD 302          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19
Identity = 71/275 (25.82%), Postives = 109/275 (39.64%), Query Frame = 3
Query:   75 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHY-----GKCMDQRFKQMVASKGLEAVQSEVNDLDWESTF----------------FLRHLPVSNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSD 836
            N P IDLS  + D       +I +AC   GFF +VNHG+S  L+    RL +  +     GK   QR                   L W+ T                 +          +   +  DY +AM   ++++ ++                     +           ++++YPPC  PDL  G   H D   + +L QD  V+GLQ+  D+QW  + P   + V+N+GD    ++NG +KS LHR +   E  R S+A F  P  D
Sbjct:   62 NVPFIDLS--SQDSTLEAPRVIAEACTKHGFFLVVNHGVSESLIADAHRLMESFFDMPLAGKQKAQRKPGESCGYASSFTGRFSTKLPWKETLSFQFSNDNSGSRTVQDYFSDTLGQEFEQFGKVYQDYCEAMSSLSLKIMELLGLSLGVNRDYFRGFFEENDSIM----------RLNHYPPCQTPDLTLGTGPHCDPSSLTILHQD-HVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKD 323          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.695e-19
Identity = 74/269 (27.51%), Postives = 123/269 (45.72%), Query Frame = 3
Query:   81 PIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFK--------------QMVASKGLEAVQ-SEVNDLDWESTFFLRHLPVSN--MAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNY-PPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQ--LLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNP 827
            PIIDL +         ++ I  AC+++G F+++NHG   EL+     + KE +    +++ K              +  A   +E  Q S    L W+ T      P+    +   P+    YR+ + +++VE+ K+                   K  ++ ++       ++NY PPCP P    G   H D   I LL QD  + GLQ  ++KD  W+ V P+  + V+NLG  L+VITN K++  +HRV+     +R+SIA+   P
Sbjct:   36 PIIDLQQ----HHHLLVQQITKACQDFGLFQVINHGFPEELMLETMEVCKEFFALPAEEKEKFKPKGEAAKFELPLEQKAKLYVEGEQLSNEEFLYWKDTLAHGCHPLDQDLVNSWPEKPAKYREVVAKYSVEVRKLTMRMLDYICEGLGL-----KLGYFDNELSQIQMMLTNYYPPCPDPSSTLGSGGHYDGNLITLLQQD--LPGLQQLIVKDATWIAVQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTDPTRDRVSIATLIGP 293          
BLAST of CX047028 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.744e-19
Identity = 73/266 (27.44%), Postives = 123/266 (46.24%), Query Frame = 3
Query:   54 NKQITMEN-FPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASK-GLEAVQSEVN-DLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDL----IKGLRAHTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNP 827
            N  IT  +  P++DLSK +         +I  ACE++GFF+++NHGI  + +  ++    + +     ++ K   A+  G    +  +N D+ W     L      N +   +  D +R  +K++   +  +A                         K      +V++YP CP+  +    + G   HTD   II + + +  SG Q+ L+D  W+ VPP   S  IN+GD L+V+TNG++KSV HRV+A     R+S+  F  P
Sbjct:   18 NMPITFSSSIPLVDLSKPDAKT------LIVKACEDFGFFKVINHGIPLDAISQLESEAFKFFSLPQTEKEKAGPANPFGYGNKRIGLNGDIGWIEYLLLTTNQDHNFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQ-IISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGIDPRLSMIYFCGP 276          
The following BLAST results are available for this feature:
BLAST of CX047028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
GAO1B_WHEAT5.477e-2127.24Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
ACCH2_ARATH5.477e-2127.481-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G2OX7_ARATH9.342e-2126.56Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
GAOX3_ARATH1.220e-2027.24Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
GAO1D_WHEAT1.594e-2027.24Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
G2OX1_ARATH2.081e-2027.27Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
GAO1A_WHEAT4.637e-2026.87Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
GAOX2_ARATH1.033e-1925.82Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
HY6H_HYONI6.695e-1927.51Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
G2OX1_PEA8.744e-1927.44Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F12-L24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047028 ID=CX047028; Name=CX047028; organism=Citrus sinensis; type=EST; length=841bp
CTAGAGTTTTTTAAGTGATCATAGAGTAAGAAGGGAGATTGTGGGAGTTA
AGAAACAAACAAATAACAATGGAGAATTTTCCAATTATTGACTTGTCAAA
GCTCAATGGTGATGAGAGAAGTGCTACCATGGAAATGATCAATGATGCCT
GTGAGAACTGGGGTTTCTTTGAGTTGGTGAATCATGGGATATCACATGAG
CTGCTGGACACTGTTCAGAGGTTGACAAAGGAGCATTACGGGAAGTGTAT
GGACCAAAGATTCAAGCAAATGGTGGCAAGCAAGGGCCTTGAAGCTGTTC
AGTCCGAAGTTAATGATTTGGACTGGGAAAGCACTTTCTTCTTGCGCCAC
CTTCCTGTTTCAAACATGGCTGAAATCCCCGATCTTGAAGATGATTACAG
GAAGGCAATGAAGGAATTTGCCGTTGAATTGGAGAAGGTTGCTGAGCAAC
TTCTGGAATTGTTGTGTGAGAATCTTGGGCTGGAGGAAGGGTATTTGAAG
AAAGTGTTTTATGGGTCCAAAGGACCAACCTTTGGCACCAAGGTCAGCAA
TTACCCTCCATGCCCAAAACCAGATCTGATCAAGGGACTTAGGGCCCATA
CTGATGCTGGTGGCATCATCTTGCTCTTTCAAGATGACGAAGTCAGTGGC
CTCCAGCTGCTCAAAGATGACCAATGGGTTGATGTTCCACCCATGAAACA
CTCCATTGTCATCAACCTCGGTGACCAACTTGAGGTGATAACCAATGGCA
AGTACAAGAGTGTGCTACATCGCGTGATTGCTCAAACAGAGGGTAACAGG
ATGTCCATAGCATCATTTTACAATCCAGGCAGTGATGCTGT
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